Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JTF64_RS00600 Genome accession   NZ_CP070339
Coordinates   125626..126405 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain VKM B-370     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 120626..131405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTF64_RS00580 (JTF64_00575) trmFO 121280..122584 (+) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JTF64_RS00585 (JTF64_00580) xerC 122650..123549 (+) 900 WP_001101245.1 tyrosine recombinase XerC -
  JTF64_RS00590 (JTF64_00585) hslV 123592..124134 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  JTF64_RS00595 (JTF64_00590) hslU 124157..125548 (+) 1392 WP_000550083.1 ATP-dependent protease ATPase subunit HslU -
  JTF64_RS00600 (JTF64_00595) codY 125626..126405 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JTF64_RS00605 (JTF64_00600) rpsB 126753..127454 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  JTF64_RS00610 (JTF64_00605) tsf 127558..128445 (+) 888 WP_001018576.1 translation elongation factor Ts -
  JTF64_RS00615 (JTF64_00610) pyrH 128512..129234 (+) 723 WP_000042669.1 UMP kinase -
  JTF64_RS00620 (JTF64_00615) frr 129237..129794 (+) 558 WP_000531505.1 ribosome recycling factor -
  JTF64_RS00625 (JTF64_00620) uppS 129880..130656 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=539195 JTF64_RS00600 WP_000421290.1 125626..126405(+) (codY) [Bacillus cereus strain VKM B-370]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=539195 JTF64_RS00600 WP_000421290.1 125626..126405(+) (codY) [Bacillus cereus strain VKM B-370]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459