Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JQN77_RS09845 Genome accession   NZ_CP070306
Coordinates   2002591..2003463 (+) Length   290 a.a.
NCBI ID   WP_000931873.1    Uniprot ID   -
Organism   Staphylococcus sp. SM9054     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1997591..2008463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN77_RS09825 (JQN77_09825) ylqF 1998427..1999311 (+) 885 WP_000236722.1 ribosome biogenesis GTPase YlqF -
  JQN77_RS09830 (JQN77_09830) - 1999295..2000062 (+) 768 WP_000176409.1 ribonuclease HII -
  JQN77_RS09835 (JQN77_09835) sucC 2000171..2001337 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  JQN77_RS09840 (JQN77_09840) sucD 2001359..2002267 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  JQN77_RS09845 (JQN77_09845) dprA 2002591..2003463 (+) 873 WP_000931873.1 DNA-processing protein DprA Machinery gene
  JQN77_RS09850 (JQN77_09850) topA 2003637..2005712 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  JQN77_RS09855 (JQN77_09855) trmFO 2005868..2007175 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33186.43 Da        Isoelectric Point: 8.3112

>NTDB_id=539146 JQN77_RS09845 WP_000931873.1 2002591..2003463(+) (dprA) [Staphylococcus sp. SM9054]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTSALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=539146 JQN77_RS09845 WP_000931873.1 2002591..2003463(+) (dprA) [Staphylococcus sp. SM9054]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
GAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTTTGTGTCGTTTCCGGGCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATCAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.347

100

0.683
  dprA Staphylococcus aureus N315

66.552

100

0.666
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362