Detailed information NTG0539062

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JK088_RS05420
• Genome accession: NZ_CP085857
• Coordinates: 1163855..1165144 (+)
• Length: 429 a.a.
• NCBI ID: WP_043046476.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LH214
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1158855..1170144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK088_RS05405 (JK088_05400)	lrp	1159354..1159848 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
JK088_RS05410 (JK088_05405)	-	1160001..1163087 (+)	3087	WP_017448306.1	DNA translocase FtsK	-
JK088_RS05415 (JK088_05410)	lolA	1163162..1163788 (+)	627	WP_017448307.1	outer membrane lipoprotein chaperone LolA	-
JK088_RS05420 (JK088_05415)	rarA	1163855..1165144 (+)	1290	WP_043046476.1	replication-associated recombination protein A	Machinery gene
JK088_RS05425 (JK088_05420)	serS	1165236..1166543 (+)	1308	WP_017448309.1	serine--tRNA ligase	-
JK088_RS05430 (JK088_05425)	-	1166644..1167615 (+)	972	WP_232700533.1	peptidoglycan-binding domain-containing protein	-
JK088_RS05435 (JK088_05430)	-	1167615..1168328 (+)	714	WP_017448311.1	hypothetical protein	-
JK088_RS05440 (JK088_05435)	-	1168469..1168735 (+)	267	WP_017448312.1	DksA/TraR family C4-type zinc finger protein	-
JK088_RS05445 (JK088_05440)	bioA	1168805..1170085 (-)	1281	WP_017448313.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47590.79 Da
• Isoelectric Point: 5.6959

>NTDB_id=539062 JK088_RS05420 WP_043046476.1 1163855..1165144(+) (rarA) [Vibrio parahaemolyticus strain LH214]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPYHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=539062 JK088_RS05420 WP_043046476.1 1163855..1165144(+) (rarA) [Vibrio parahaemolyticus strain LH214]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGATGCACATAACTTGCCTGAATA
TGAAGTGCCGTATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385