Detailed information NTG0538872

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: PCC6301pg_RS12680
• Genome accession: NZ_CP085785
• Coordinates: 2530364..2531443 (-)
• Length: 359 a.a.
• NCBI ID: WP_011243962.1
• Uniprot ID: Q31KD6
• Organism: Synechococcus elongatus PCC 6301
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2525364..2536443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCC6301pg_RS12655 (PCC6301pg_2543)	-	2525654..2526289 (+)	636	WP_011378467.1	peroxiredoxin	-
PCC6301pg_RS12660 (PCC6301pg_2544)	-	2526461..2528776 (-)	2316	WP_011378468.1	secretin N-terminal domain-containing protein	-
PCC6301pg_RS12665 (PCC6301pg_2545)	-	2528854..2529648 (-)	795	WP_011378469.1	hypothetical protein	-
PCC6301pg_RS12670 (PCC6301pg_2546)	-	2529645..2530016 (-)	372	WP_081422177.1	PilN domain-containing protein	-
PCC6301pg_RS12675 (PCC6301pg_2547)	-	2530023..2530361 (-)	339	WP_011243963.1	hypothetical protein	-
PCC6301pg_RS12680 (PCC6301pg_2548)	pilM	2530364..2531443 (-)	1080	WP_011243962.1	type IV pilus biogenesis protein PilM	Machinery gene
PCC6301pg_RS12685	-	2531585..2532418 (-)	834	WP_341275691.1	ABC transporter permease	-
PCC6301pg_RS12690 (PCC6301pg_2549)	-	2532392..2532860 (-)	469	Protein_2505	adenine phosphoribosyltransferase	-
PCC6301pg_RS12695 (PCC6301pg_2550)	-	2532935..2533654 (+)	720	WP_234701761.1	DUF3038 domain-containing protein	-
PCC6301pg_RS12700 (PCC6301pg_2551)	-	2533661..2534611 (+)	951	WP_011243958.1	DUF4335 domain-containing protein	-
PCC6301pg_RS12705 (PCC6301pg_2552)	glyQ	2534726..2535604 (+)	879	WP_011378472.1	glycine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 359 a.a.
• Molecular weight: 39624.35 Da
• Isoelectric Point: 4.3756

>NTDB_id=538872 PCC6301pg_RS12680 WP_011243962.1 2530364..2531443(-) (pilM) [Synechococcus elongatus PCC 6301]
MVGIFSKFLGGDQSRLGVEITPERINLAHIGRKGNRLQLQDFVSVELPDGLFQDGRVLDSFSLSDLLRTAINDNRIRTKR
VSTAVPGREVITRLLPMPAELDDAELRETLINQEAALFLPFPREEADIDYLKLDYFLDADEVEKLHVLLVATRRQVTDVY
LDLFAQAGLTPDIVEVGSFALIRTIREALRQYGLQEAVILLNVEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGI
DNTGRGIDFLQGRSFTLLEPPADLLSQALARSVTELCDEVRRSADFYLSQETDIEVAKLYVAGPGSALPTLPEFLGQRLG
LPVELVDPVEGLGLEVAENLYLPNRADVGVVLGLATRGV

Nucleotide

• Length: 1080 bp

>NTDB_id=538872 PCC6301pg_RS12680 WP_011243962.1 2530364..2531443(-) (pilM) [Synechococcus elongatus PCC 6301]
GTGGTCGGCATTTTTTCTAAGTTTCTTGGTGGCGATCAATCGCGCCTTGGGGTGGAAATTACCCCAGAGCGGATCAATCT
TGCCCACATTGGCCGCAAGGGGAATCGCCTGCAGCTTCAGGATTTTGTTTCCGTGGAGCTACCGGATGGGTTGTTTCAAG
ACGGGCGCGTGCTAGATAGCTTCAGCCTGTCCGATCTGCTCCGCACCGCCATCAACGACAACCGCATCAGAACCAAAAGA
GTCTCCACTGCGGTGCCAGGACGAGAGGTGATCACCCGGCTGCTGCCCATGCCCGCGGAGCTCGATGATGCCGAATTGCG
CGAGACACTGATCAATCAAGAAGCTGCTCTGTTCCTGCCCTTCCCGCGTGAAGAGGCCGACATCGACTATCTGAAACTGG
ACTATTTTCTGGACGCGGATGAGGTCGAAAAGTTGCACGTCCTGCTCGTGGCGACTCGTCGGCAGGTGACCGATGTCTAC
CTTGATCTCTTTGCCCAAGCTGGCCTGACGCCTGACATTGTGGAAGTTGGGAGCTTTGCGCTAATCCGAACGATTCGCGA
AGCGCTGCGCCAGTACGGATTGCAAGAAGCGGTCATTCTCCTCAACGTGGAATATGACCTCACAGAAATCGTGATTATCG
TTGGGGGCGTGCCTCGGTTTAGCCGCACGATCGCCATGGGTACTCAGCAGTGGCAGCGGGCTGCAGCCCAAGCTGGTATC
GACAATACAGGACGGGGTATTGATTTCCTGCAGGGGCGATCGTTCACATTGCTCGAACCCCCGGCTGATCTCCTCTCTCA
AGCTCTGGCACGATCGGTCACCGAGCTCTGTGATGAAGTACGGCGATCGGCTGACTTCTACCTCAGCCAAGAGACCGATA
TTGAAGTAGCCAAGCTCTACGTTGCAGGTCCAGGCTCAGCCTTGCCAACACTACCCGAGTTTCTGGGGCAACGCCTAGGG
CTCCCTGTAGAACTCGTCGATCCTGTCGAGGGGTTGGGGCTCGAGGTGGCGGAGAACCTTTATTTGCCAAATCGCGCTGA
TGTGGGCGTGGTGTTGGGCTTAGCCACGCGAGGAGTATAG

Domains

Predicted by InterProScan.

• Type IV pilus assembly protein PilM; (PilM_2) (17-357)

3D structure

• AlphaFold DB: Q31KD6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Synechocystis sp. PCC 6803	46.322	100	0.474