Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PCC6301pg_RS11630 Genome accession   NZ_CP085785
Coordinates   2316560..2317723 (-) Length   387 a.a.
NCBI ID   WP_011378373.1    Uniprot ID   Q31KY9
Organism   Synechococcus elongatus PCC 6301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2311560..2322723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC6301pg_RS11605 (PCC6301pg_2334) mutS 2311795..2314443 (+) 2649 WP_011378371.1 DNA mismatch repair protein MutS -
  PCC6301pg_RS11610 (PCC6301pg_2335) - 2314637..2314837 (+) 201 WP_039755581.1 hypothetical protein -
  PCC6301pg_RS11615 (PCC6301pg_2336) - 2314937..2315212 (-) 276 WP_011244160.1 HU family DNA-binding protein -
  PCC6301pg_RS11620 (PCC6301pg_2337) speD 2315547..2315972 (-) 426 WP_011378372.1 adenosylmethionine decarboxylase -
  PCC6301pg_RS11625 (PCC6301pg_2338) - 2316146..2316328 (+) 183 WP_039755580.1 hypothetical protein -
  PCC6301pg_RS11630 (PCC6301pg_2339) recF 2316560..2317723 (-) 1164 WP_011378373.1 DNA replication/repair protein RecF Machinery gene
  PCC6301pg_RS11640 - 2318108..2318449 (+) 342 WP_039755578.1 hypothetical protein -
  PCC6301pg_RS11645 (PCC6301pg_2342) ppc 2318412..2321330 (-) 2919 Protein_2301 phosphoenolpyruvate carboxylase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 43910.05 Da        Isoelectric Point: 7.3543

>NTDB_id=538868 PCC6301pg_RS11630 WP_011378373.1 2316560..2317723(-) (recF) [Synechococcus elongatus PCC 6301]
MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGAESALLTAVVERDSGE
QQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDLDLVRGGPQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQ
RNALLRRAESLDLALLAPLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEAIAWQ
ERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQASQGQQRTLVLSLKLAELELIEAVLGEPPLLLLDDVLAE
LDLRRQQQLLEAIANRFQTLITTTHLSAFDQSWVETAQILTVQSGHLQSEAVPMAPSSASLHKSLDS

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=538868 PCC6301pg_RS11630 WP_011378373.1 2316560..2317723(-) (recF) [Synechococcus elongatus PCC 6301]
ATGTTTTTGCATAGCCTTCACCTTCAACACTTTCGCAACTATCGCGATCAAACGGTGCAGTTCCAAGCTCCGAAGACAAT
CCTGCTCGGCGAAAACGCCCAGGGCAAAACCAATCTGCTGGAAGCCGTTGAACTGTTCTCAACCCTGCGATCGCATCGGG
TCAGTCGCGATCGCGATTTGGTTCAGACCGGAGCTGAGTCAGCGCTTCTAACAGCGGTTGTTGAGCGCGACAGCGGCGAG
CAACAGTTGCAAATTCAGCTTCAACAACAAGGTCGGCGGCGGGTTCAGCGAGATGGCGAAGTCCTACGGCGACAGCTTGA
TCTGCTGGGCTCGCTCTGCAGCGTTCAATTTTCCTCCCTTGACCTGGACTTGGTACGAGGGGGGCCCCAGCAACGCCGTG
ACTGGCTCGATCGCCTGCTGATTCAACTCCAGCCGATCTATGCCCATCTGCAACAGCAATACGGGCGCGTGTTGCGGCAG
CGCAATGCCCTGCTGAGGCGGGCAGAGTCTCTCGATCTGGCACTGCTGGCGCCACTCAACTGGCAACTAGCTCAGCTCGG
TGTCCACATCATGCGGCGGCGATCGCGAGCAATTCAACGCCTTGTGCCCTTGGCTGCCCACTGGCACAGGGAAATTAGTG
GTCAACGGGAGCAACTGATCGTGGCCTATCAGCCCAGTGTGCTGGCCCCCGACGACACCGATGAGGCGATCGCGTGGCAA
GAACGAATGCTGGCGCAGATCGAGGCTCGGCGGGCGGCGGAATTAGGTCAACGCACCAGTCTGGTTGGCCCCCATCGTGA
TGACCTCAATCTCAGCATCAACGGTACTGAAGCCCGGCTTCAAGCATCCCAAGGGCAGCAGCGCACCTTAGTGCTGTCGC
TCAAGTTGGCGGAGCTGGAGTTGATCGAAGCAGTATTGGGCGAGCCGCCCCTGCTGTTGCTGGATGATGTCTTAGCAGAA
CTGGACCTTCGGCGACAGCAACAATTACTAGAAGCGATCGCCAACCGTTTTCAGACGCTGATTACAACCACGCATCTTTC
GGCCTTTGACCAAAGCTGGGTGGAGACCGCTCAAATCCTTACGGTGCAGTCGGGTCATTTGCAGTCTGAAGCGGTGCCGA
TGGCCCCAAGCAGCGCGTCCCTGCATAAGTCCCTGGATAGTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31KY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

39.617

94.574

0.375