Detailed information NTG0537844

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LIN98_RS09410
• Genome accession: NZ_CP085096
• Coordinates: 1909922..1911262 (-)
• Length: 446 a.a.
• NCBI ID: WP_005568320.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 4S
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1904922..1916262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN98_RS09395	cdd	1905159..1906055 (+)	897	WP_005547383.1	cytidine deaminase	-
LIN98_RS09400	serS	1906134..1907450 (-)	1317	WP_005567230.1	serine--tRNA ligase	-
LIN98_RS09405	-	1907758..1909425 (+)	1668	WP_025298503.1	anaerobic C4-dicarboxylate transporter	-
LIN98_RS09410	rarA	1909922..1911262 (-)	1341	WP_005568320.1	replication-associated recombination protein A	Machinery gene
LIN98_RS09415	lolA	1911275..1911892 (-)	618	WP_005540265.1	outer membrane lipoprotein chaperone LolA	-
LIN98_RS09420	-	1911985..1914729 (-)	2745	WP_014167921.1	DNA translocase FtsK	-
LIN98_RS09425	lrp	1914733..1915212 (-)	480	WP_005540269.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49727.69 Da
• Isoelectric Point: 6.3254

>NTDB_id=537844 LIN98_RS09410 WP_005568320.1 1909922..1911262(-) (rarA) [Aggregatibacter actinomycetemcomitans strain 4S]
MSNFSFDFNENDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRINVEVER
ISAVTSGIKEIREAIDKAKQNKLAGLRTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
ILKPLSAQEIEQVLQQAIDDPENGLGKVRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAGESENGKILDRTLLTEVL
GERQARFDKQGDLFYDFISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYLAFKAAKKLATESADFDVPEHLRNAPTSFMKDLGFGAEYRYAHNEPNAYAA
GENYFPPQLKDTQFYFPTTRGMEIKIKEKLEWLRGLDQESGKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=537844 LIN98_RS09410 WP_005568320.1 1909922..1911262(-) (rarA) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGTCTAACTTCAGCTTTGATTTCAACGAAAATGACTTTCGCCCGCTTGCTGCAAGAATGCGCCCCACCACCTTGGCGCA
ATATTGCGGTCAGTCTCATTTATTGGGCGAAGGAAAACCGTTGCGCAAAGCTATTGAAGCGGGATATGTTCATTCCATGA
TTTTCTGGGGCCCGCCCGGCACCGGTAAAACCACCTTGGCGGAAATTATCGCCCATCGCATTAATGTGGAAGTAGAGCGC
ATTTCCGCCGTCACCAGCGGCATTAAAGAAATCCGTGAAGCCATCGACAAAGCCAAACAAAACAAACTGGCAGGTTTGCG
CACCATTTTGTTTGTAGATGAAGTGCATCGTTTCAACAAAAGCCAGCAAGACGCTTTCCTGCCGCATATTGAAGACGGCA
CCATTATTTTTATCGGCGCTACCACGGAAAATCCCTCTTTTGAACTCAATAACGCGTTGCTTTCCCGCGCGCGGGTTTAT
ATTCTAAAACCGCTTTCCGCGCAGGAAATCGAACAGGTTTTACAACAAGCCATAGATGACCCCGAAAACGGTTTGGGTAA
AGTGCGGTTAAATTTACAAGAGAATTTATTGTCCCTGTTGGCAGAATACGTCAATGGCGACGCCCGCCTTGCTTTGAACT
GCCTGGAAATGATGGTGGACATGGCGGGCGAATCGGAAAACGGCAAAATTTTAGACCGCACTTTACTCACGGAAGTGTTG
GGCGAACGGCAGGCGCGTTTTGATAAACAAGGTGACCTTTTCTACGATTTCATTTCCGCACTGCACAAATCCATTCGCGG
ATCCGCCCCTGATGCGGCGTTATACTGGTACGCGCGCATTATCACTGCCGGCGGGGATCCTCTTTATGTGGCACGTCGAT
TATTGGCAATTGCTTCCGAAGATGTGGGCAACGCTGACCCGCGCGCCATGCAGGTGGCACTTGCCGCCTGGGATTGTTTC
ACCCGCGTCGGCGCTGCCGAAGGCGAACGCGCTATTGCGCAAGCCATTGTGTATTTAGCCGTCGCACCGAAAAGCAACGC
CGTTTATCTCGCTTTCAAAGCCGCCAAAAAATTGGCAACCGAATCCGCCGATTTCGACGTCCCTGAACATCTCCGCAACG
CCCCGACCAGCTTCATGAAAGACCTCGGCTTCGGCGCCGAATACCGCTACGCCCACAATGAACCTAACGCCTACGCTGCC
GGCGAAAACTACTTCCCGCCACAACTGAAAGACACCCAATTCTATTTCCCGACCACCAGAGGCATGGAAATTAAGATTAA
GGAGAAGTTGGAATGGCTGCGGGGGTTAGATCAGGAAAGTGGTAAGAAGCGATATAAATAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (53-163)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• AAA C-terminal domain (AAA_assoc_2) (189-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.146	92.152	0.37