Detailed information NTG0537796

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: LIN97_RS09790
• Genome accession: NZ_CP085095
• Coordinates: 1958183..1959523 (-)
• Length: 446 a.a.
• NCBI ID: WP_249849275.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain 5R
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1953183..1964523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN97_RS09775	cdd	1953420..1954316 (+)	897	WP_005547383.1	cytidine deaminase	-
LIN97_RS09780	serS	1954395..1955711 (-)	1317	WP_249849274.1	serine--tRNA ligase	-
LIN97_RS09785	-	1956019..1957686 (+)	1668	WP_005567229.1	anaerobic C4-dicarboxylate transporter	-
LIN97_RS09790	rarA	1958183..1959523 (-)	1341	WP_249849275.1	replication-associated recombination protein A	Machinery gene
LIN97_RS09795	lolA	1959536..1960153 (-)	618	WP_005540265.1	outer membrane lipoprotein chaperone LolA	-
LIN97_RS09800	-	1960246..1962990 (-)	2745	WP_014167921.1	DNA translocase FtsK	-
LIN97_RS09805	lrp	1962994..1963473 (-)	480	WP_005540269.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49726.74 Da
• Isoelectric Point: 6.7048

>NTDB_id=537796 LIN97_RS09790 WP_249849275.1 1958183..1959523(-) (rarA) [Aggregatibacter actinomycetemcomitans strain 5R]
MSNFSFDFNKNDFRPLAARMRPTTLAQYCGQSHLLGEGKPLRKAIEAGYVHSMIFWGPPGTGKTTLAEIIAHRINVEVER
ISAVTSGIKEIREAIDKAKQNKLAGLRTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
ILKPLSAQEIEQVLQQAIDDPENGLGKVRLNLQENLLSLLAEYVNGDARLALNCLEMMVDMAGESENGKILDRTLLTEVL
GERQARFDKQGDLFYDFISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYLAFKAAKKLATESADFDVPEHLRNAPTSFMKDLGFGAEYRYAHNEPNAYAA
GENYFPPQLKDTQFYFPTTRGMEIKIKEKLEWLRGLDQESGKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=537796 LIN97_RS09790 WP_249849275.1 1958183..1959523(-) (rarA) [Aggregatibacter actinomycetemcomitans strain 5R]
ATGTCTAACTTCAGCTTTGATTTCAACAAAAATGACTTTCGCCCGCTTGCTGCAAGAATGCGCCCCACCACCTTGGCGCA
ATATTGCGGTCAGTCTCATTTATTGGGCGAAGGAAAACCGTTGCGCAAAGCTATTGAAGCGGGATATGTTCATTCCATGA
TTTTCTGGGGCCCGCCCGGCACCGGTAAAACCACCTTGGCGGAAATTATCGCCCATCGCATTAATGTGGAAGTAGAGCGC
ATTTCCGCCGTCACCAGCGGCATTAAAGAAATCCGTGAAGCCATCGACAAAGCCAAACAAAACAAACTGGCAGGTTTGCG
CACCATTTTGTTTGTAGATGAAGTGCATCGTTTCAACAAAAGCCAGCAAGACGCTTTCCTGCCGCATATTGAAGACGGCA
CCATTATTTTTATCGGCGCTACCACGGAAAATCCCTCTTTTGAACTCAATAACGCGTTGCTTTCCCGCGCGCGGGTTTAT
ATTCTAAAACCGCTTTCCGCGCAGGAAATCGAACAGGTTTTACAACAAGCCATAGATGACCCCGAAAACGGTTTGGGTAA
AGTGCGGTTAAATTTACAAGAGAATTTATTGTCCCTGTTGGCAGAATACGTCAATGGCGACGCCCGTCTTGCTTTGAACT
GCCTGGAAATGATGGTGGACATGGCGGGCGAATCGGAAAACGGCAAAATTTTAGACCGCACTTTACTCACGGAAGTGTTG
GGCGAACGGCAGGCGCGTTTTGATAAACAAGGTGACCTTTTCTACGATTTCATTTCCGCACTGCACAAATCCATTCGCGG
ATCCGCCCCTGATGCGGCGTTATACTGGTACGCGCGCATTATCACTGCCGGCGGGGATCCTCTTTATGTGGCACGTCGAT
TATTGGCAATTGCTTCCGAAGATGTGGGCAACGCCGACCCGCGCGCCATGCAGGTGGCACTTGCCGCCTGGGATTGTTTC
ACCCGCGTCGGCGCTGCCGAAGGCGAACGCGCTATTGCGCAAGCCATTGTGTATTTAGCCGTCGCACCGAAAAGCAACGC
CGTTTATCTCGCTTTCAAAGCCGCCAAAAAATTGGCAACCGAATCCGCCGATTTCGACGTCCCTGAACATCTCCGCAACG
CCCCGACCAGCTTCATGAAAGACCTCGGCTTCGGCGCCGAATACCGCTACGCCCACAATGAACCTAACGCCTACGCTGCC
GGCGAAAACTACTTCCCGCCACAACTGAAAGACACCCAATTCTATTTCCCGACCACCAGAGGCATGGAAATTAAGATTAA
GGAGAAGTTGGAATGGCTGCGGGGGTTAGATCAGGAAAGTGGTAAGAAGCGATATAAATAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (53-163)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• AAA C-terminal domain (AAA_assoc_2) (189-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.146	92.152	0.37