Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LIN93_RS09790 Genome accession   NZ_CP085091
Coordinates   2000962..2001201 (-) Length   79 a.a.
NCBI ID   WP_025298523.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995962..2006201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS09775 - 1996642..1997079 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  LIN93_RS09780 rimI 1997089..1997532 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN93_RS09785 recC 1997534..2000950 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  LIN93_RS09790 comQ 2000962..2001201 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  LIN93_RS09795 comO 2001167..2001865 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  LIN93_RS09800 comN 2001852..2002373 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  LIN93_RS09820 pal 2003078..2003545 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  LIN93_RS09825 tolB 2003560..2004840 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN93_RS09830 tolA 2004875..2006083 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 9289.46 Da        Isoelectric Point: 9.2618

>NTDB_id=537593 LIN93_RS09790 WP_025298523.1 2000962..2001201(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 30S]
MDVLNDINRSNNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 240 bp        

>NTDB_id=537593 LIN93_RS09790 WP_025298523.1 2000962..2001201(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 30S]
GTGGACGTTTTAAACGACATAAACAGATCGAATAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCA
GCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGC
AAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(40-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.061

83.544

0.468