Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K87_RS08890 Genome accession   NZ_CP069892
Coordinates   1793397..1793888 (+) Length   163 a.a.
NCBI ID   WP_003039831.1    Uniprot ID   A0AAI9J8L2
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1788397..1798888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS08860 (I6K87_08860) - 1789066..1789659 (+) 594 WP_204982565.1 histidine phosphatase family protein -
  I6K87_RS08865 (I6K87_08865) - 1789660..1790262 (+) 603 WP_204982566.1 histidine phosphatase family protein -
  I6K87_RS08870 (I6K87_08870) - 1790497..1790907 (-) 411 WP_204982567.1 hypothetical protein -
  I6K87_RS08875 (I6K87_08875) - 1790882..1791787 (-) 906 WP_204982568.1 phosphodiester glycosidase family protein -
  I6K87_RS08880 (I6K87_08880) - 1791784..1792827 (-) 1044 WP_204982569.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  I6K87_RS08885 (I6K87_08885) rpsF 1793095..1793385 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  I6K87_RS08890 (I6K87_08890) ssb 1793397..1793888 (+) 492 WP_003039831.1 single-stranded DNA-binding protein Machinery gene
  I6K87_RS08895 (I6K87_08895) rpsR 1793925..1794164 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6K87_RS08900 (I6K87_08900) - 1794346..1795023 (-) 678 WP_204982570.1 DUF1129 domain-containing protein -
  I6K87_RS08905 (I6K87_08905) - 1795039..1795983 (-) 945 WP_003030529.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18261.97 Da        Isoelectric Point: 4.9008

>NTDB_id=537282 I6K87_RS08890 WP_003039831.1 1793397..1793888(+) (ssb) [Streptococcus anginosus strain FDAARGOS_1357]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGSYTSNNFGNSSSNFGNSTSVNQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=537282 I6K87_RS08890 WP_003039831.1 1793397..1793888(+) (ssb) [Streptococcus anginosus strain FDAARGOS_1357]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTCATTAACGTTGTGATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTGGCGGATAATTTCCAACTGTTAGAAAGCCGTGC
CAGCCGTGAAGGTCAATCTTCTGGTAGCTATACTTCTAATAACTTCGGAAATTCATCTTCCAATTTTGGGAACTCAACTT
CTGTTAACCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGATATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368