Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   LIO32_RS01100 Genome accession   NZ_CP085087
Coordinates   204360..206849 (-) Length   829 a.a.
NCBI ID   WP_024405450.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 199360..211849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS01080 - 201260..202069 (+) 810 WP_023369178.1 6-phosphogluconolactonase -
  LIO32_RS10480 - 202252..204321 (+) 2070 Protein_182 heavy metal translocating P-type ATPase -
  LIO32_RS01100 recD/recD2/recDB 204360..206849 (-) 2490 WP_024405450.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIO32_RS01105 lepB 207078..207707 (-) 630 WP_002935959.1 signal peptidase I -
  LIO32_RS01110 rnhC 207718..208608 (-) 891 WP_024405449.1 ribonuclease HIII -
  LIO32_RS01115 - 208693..209676 (+) 984 WP_074389377.1 Gfo/Idh/MocA family protein -
  LIO32_RS01120 - 210025..211224 (+) 1200 WP_074389375.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93130.43 Da        Isoelectric Point: 4.5799

>NTDB_id=537282 LIO32_RS01100 WP_024405450.1 204360..206849(-) (recD/recD2/recDB) [Streptococcus suis strain Ssuis_MA2]
MNEVYVTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGDDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDAPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQESKESLIKKDESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=537282 LIO32_RS01100 WP_024405450.1 204360..206849(-) (recD/recD2/recDB) [Streptococcus suis strain Ssuis_MA2]
ATGAACGAAGTGTATGTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGTAAAACAGCTGAGAAAAT
TGTGGAGCTATATGGCGATGATACCATTGATAAGATTTTGGCCGAGCCTGAAAAACTAACTCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATG
CACCCCAACGTTTTCGGGCAGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCTACCCTTGAACTGCTGGAAAAATCCCGCCATACCGAGCTGGACCCCGCTGCTGTTGCCCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGTCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGATGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATGTCTTCTCTCACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGCATTATCGCAGTCTATGCTATCTTGC
ATAAGATTGACCTGACGCGAAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAACCAGACGGATG
AATGAATTGACAGGGCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAGGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ATATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCCGAGCAATTGCCTTCTGTCAGCCCCGGTCAAGTACTTGCT
GACCTCTTGAAAATTGACAAGCTGCCCAGCATTACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGACAGGGTGCTCTGCCTAGCGATTTTCGTGAGAAAAAGGCTGACCGTTCCTATTTTGAAGCCC
AGAATGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCAGGTATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACTATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTGCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATTTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTTCCTGCCAAGTACACCGACTCCAAGCAGGACGAA
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGAAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTCCCCATCACCCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGAAAGTAAGGAAAG
CCTGATTAAAAAAGACGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.153

92.039

0.379