Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LIO31_RS04815 Genome accession   NZ_CP085086
Coordinates   947698..949467 (+) Length   589 a.a.
NCBI ID   WP_074389412.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 942698..954467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS04785 - 943510..944265 (+) 756 WP_012775077.1 class I SAM-dependent methyltransferase -
  LIO31_RS04790 pcp 944262..944909 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  LIO31_RS04795 - 944909..945217 (+) 309 WP_014635963.1 DUF4298 domain-containing protein -
  LIO31_RS04800 rpsP 945341..945613 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  LIO31_RS04805 - 945635..945877 (+) 243 WP_012028079.1 KH domain-containing protein -
  LIO31_RS04810 rcrP 945953..947689 (+) 1737 WP_074389411.1 ABC transporter ATP-binding protein Regulator
  LIO31_RS04815 rcrQ 947698..949467 (+) 1770 WP_074389412.1 ABC transporter ATP-binding protein Regulator
  LIO31_RS04820 - 949524..950447 (-) 924 WP_024383788.1 polysaccharide deacetylase family protein -
  LIO31_RS04825 - 950552..951838 (+) 1287 WP_074389874.1 homoserine dehydrogenase -
  LIO31_RS04830 thrB 951842..952702 (+) 861 WP_011922331.1 homoserine kinase -
  LIO31_RS04835 murB 952933..953841 (+) 909 WP_011922332.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65758.73 Da        Isoelectric Point: 5.5749

>NTDB_id=537209 LIO31_RS04815 WP_074389412.1 947698..949467(+) (rcrQ) [Streptococcus suis strain Ssuis_MA6]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINRIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLNVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIQNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=537209 LIO31_RS04815 WP_074389412.1 947698..949467(+) (rcrQ) [Streptococcus suis strain Ssuis_MA6]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGTCACAAAATTAACAGAATTCCTGTTTCTTACTTTGATAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGAATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACTTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGTCCAACAGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCAAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436