Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LIO34_RS01880 Genome accession   NZ_CP085085
Coordinates   356036..356824 (+) Length   262 a.a.
NCBI ID   WP_013730143.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 351036..361824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS01860 - 351334..352293 (-) 960 WP_014636805.1 asparaginase -
  LIO34_RS01865 - 352363..353728 (+) 1366 Protein_328 Cof-type HAD-IIB family hydrolase -
  LIO34_RS01870 - 353744..354196 (-) 453 WP_004194294.1 universal stress protein -
  LIO34_RS01875 - 354351..355565 (+) 1215 WP_172005893.1 pyridoxal phosphate-dependent aminotransferase -
  LIO34_RS01880 codY 356036..356824 (+) 789 WP_013730143.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LIO34_RS01885 - 356826..357377 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  LIO34_RS01890 - 357660..358848 (+) 1189 Protein_333 IS110 family transposase -
  LIO34_RS01895 rplS 359406..359753 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  LIO34_RS01900 - 359935..360609 (+) 675 WP_013730145.1 hydrolase -
  LIO34_RS01905 gatC 360827..361129 (+) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29263.33 Da        Isoelectric Point: 4.6797

>NTDB_id=537092 LIO34_RS01880 WP_013730143.1 356036..356824(+) (codY) [Streptococcus suis strain Ssuis_MA8]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=537092 LIO34_RS01880 WP_013730143.1 356036..356824(+) (codY) [Streptococcus suis strain Ssuis_MA8]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489