Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LH370_RS17410 Genome accession   NZ_CP085063
Coordinates   3633305..3634069 (-) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain P31_YH1_02.21     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3628305..3639069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH370_RS17400 (LH370_17400) nikR 3632096..3632497 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  LH370_RS17405 (LH370_17405) nikE 3632502..3633308 (-) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  LH370_RS17410 (LH370_17410) amiE 3633305..3634069 (-) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  LH370_RS17415 (LH370_17415) nikC 3634069..3634902 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  LH370_RS17420 (LH370_17420) nikB 3634899..3635843 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  LH370_RS17425 (LH370_17425) nikA 3635843..3637417 (-) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  LH370_RS17430 (LH370_17430) acpT 3637528..3638115 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=536770 LH370_RS17410 WP_001136198.1 3633305..3634069(-) (amiE) [Escherichia coli strain P31_YH1_02.21]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=536770 LH370_RS17410 WP_001136198.1 3633305..3634069(-) (amiE) [Escherichia coli strain P31_YH1_02.21]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402