Detailed information NTG0536003

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: JRZ89_RS18310
• Genome accession: NZ_CP069601
• Coordinates: 4043770..4044318 (+)
• Length: 182 a.a.
• NCBI ID: WP_024107203.1
• Uniprot ID: A0AAP6RYG9
• Organism: Dickeya dianthicola strain 16LI04
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	4043770..4058417	4043770..4044318	within	0

Gene organization within MGE regions

Location: 4043770..4058417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JRZ89_RS18310 (JRZ89_18300)	ssb	4043770..4044318 (+)	549	WP_024107203.1	single-stranded DNA-binding protein SSB1	Machinery gene
JRZ89_RS18315 (JRZ89_18305)	-	4044376..4044954 (-)	579	WP_024107204.1	flavin reductase family protein	-
JRZ89_RS18320 (JRZ89_18310)	-	4044989..4045288 (-)	300	WP_024107205.1	hypothetical protein	-
JRZ89_RS18325 (JRZ89_18315)	-	4045483..4045971 (+)	489	WP_024107206.1	hypothetical protein	-
JRZ89_RS18330 (JRZ89_18320)	-	4046254..4046841 (+)	588	WP_024107208.1	DUF4255 domain-containing protein	-
JRZ89_RS18335 (JRZ89_18325)	-	4046848..4047693 (+)	846	WP_024107209.1	hypothetical protein	-
JRZ89_RS18340 (JRZ89_18330)	-	4047834..4049387 (+)	1554	WP_024107210.1	phage tail sheath C-terminal domain-containing protein	-
JRZ89_RS18345 (JRZ89_18335)	-	4049439..4049909 (+)	471	WP_024107211.1	phage tail protein	-
JRZ89_RS18350 (JRZ89_18340)	-	4049988..4050446 (+)	459	WP_035044889.1	phage tail protein	-
JRZ89_RS18355 (JRZ89_18345)	-	4050467..4050649 (+)	183	WP_024107213.1	hypothetical protein	-
JRZ89_RS18360 (JRZ89_18350)	-	4050665..4051312 (+)	648	WP_024107214.1	peptidoglycan-binding protein	-
JRZ89_RS18365 (JRZ89_18355)	vgrG	4051325..4053115 (+)	1791	WP_024107215.1	type VI secretion system tip protein VgrG	-
JRZ89_RS18370 (JRZ89_18360)	-	4053506..4053805 (+)	300	WP_024107216.1	PAAR domain-containing protein	-
JRZ89_RS18375 (JRZ89_18365)	-	4053807..4054226 (+)	420	WP_024107217.1	GPW/gp25 family protein	-
JRZ89_RS18380 (JRZ89_18370)	-	4054296..4058417 (+)	4122	WP_024107218.1	baseplate J/gp47 family protein	-

Sequence

Protein

• Length: 182 a.a.
• Molecular weight: 19492.41 Da
• Isoelectric Point: 4.9562

>NTDB_id=536003 JRZ89_RS18310 WP_024107203.1 4043770..4044318(+) (ssb) [Dickeya dianthicola strain 16LI04]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGGAPAGGGTGGNAGDNPQQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPSNEPPMDFDDDIPF

Nucleotide

• Length: 549 bp

>NTDB_id=536003 JRZ89_RS18310 WP_024107203.1 4043770..4044318(+) (ssb) [Dickeya dianthicola strain 16LI04]
ATGGCCAGCAGAGGCGTTAACAAAGTGATACTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACATCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACCGAAGTGGTGGTTGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGGTGCTCCGGCCGGCGGCGGCACGGGCGGCAACGCGGGCG
ACAATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAGCAGCCGCAGCAGGCTAACCAGTTCAGCGGCGGCGGTCAGTCCCGT
CCGCAGCAAAGCGCGCCGATGCCGAGCAACGAGCCGCCGATGGATTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.863	100	0.753
ssb	Glaesserella parasuis strain SC1401	56.284	100	0.566
ssb	Neisseria gonorrhoeae MS11	46.739	100	0.473
ssb	Neisseria meningitidis MC58	45.213	100	0.467