Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LB315_RS08670 Genome accession   NZ_CP084892
Coordinates   1753154..1754428 (+) Length   424 a.a.
NCBI ID   WP_229373773.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748154..1759428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS08640 (LB315_08650) mnmA 1748355..1749473 (-) 1119 WP_000066101.1 tRNA 2-thiouridine(34) synthase MnmA -
  LB315_RS08645 (LB315_08655) - 1749474..1750616 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  LB315_RS08650 (LB315_08660) - 1750928..1751947 (+) 1020 WP_000985893.1 LLM class flavin-dependent oxidoreductase -
  LB315_RS08655 (LB315_08665) - 1752179..1752325 (-) 147 WP_000009238.1 SAS049 family protein -
  LB315_RS08660 (LB315_08670) - 1752365..1752547 (-) 183 WP_000752909.1 CsbD family protein -
  LB315_RS08665 (LB315_08675) - 1752647..1753069 (-) 423 WP_115289554.1 Rrf2 family transcriptional regulator -
  LB315_RS08670 (LB315_08680) rarA 1753154..1754428 (+) 1275 WP_229373773.1 replication-associated recombination protein A Machinery gene
  LB315_RS08675 (LB315_08685) - 1754589..1755362 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  LB315_RS08680 (LB315_08690) - 1755362..1755490 (-) 129 WP_041204300.1 hypothetical protein -
  LB315_RS08690 (LB315_08700) aspS 1755823..1757589 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  LB315_RS08695 (LB315_08705) hisS 1757605..1758867 (-) 1263 WP_229373774.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47193.70 Da        Isoelectric Point: 8.3539

>NTDB_id=535745 LB315_RS08670 WP_229373773.1 1753154..1754428(+) (rarA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDATAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSSIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=535745 LB315_RS08670 WP_229373773.1 1753154..1754428(+) (rarA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
GTGAGTACAGAACCATTAGCGTCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTATTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCACGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATCGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCGATGAGTTCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTAGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.571

99.057

0.679