Detailed information NTG0535723

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: I6J34_RS12615
• Genome accession: NZ_CP069582
• Coordinates: 2517085..2519505 (+)
• Length: 806 a.a.
• NCBI ID: WP_046099239.1
• Uniprot ID: A0AAJ0JQT4
• Organism: Staphylococcus carnosus strain FDAARGOS_1204
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2512085..2524505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J34_RS12585 (I6J34_12585)	-	2512385..2512555 (+)	171	WP_015900484.1	hypothetical protein	-
I6J34_RS12590 (I6J34_12590)	-	2512624..2512830 (+)	207	WP_015900483.1	CsbD family protein	-
I6J34_RS12595 (I6J34_12595)	-	2512871..2513869 (-)	999	WP_015900482.1	LLM class flavin-dependent oxidoreductase	-
I6J34_RS12600 (I6J34_12600)	-	2514051..2515190 (+)	1140	WP_015900481.1	cysteine desulfurase family protein	-
I6J34_RS12605 (I6J34_12605)	mnmA	2515193..2516305 (+)	1113	WP_015900480.1	tRNA 2-thiouridine(34) synthase MnmA	-
I6J34_RS12610 (I6J34_12610)	-	2516413..2517081 (+)	669	WP_103211762.1	tetratricopeptide repeat protein	-
I6J34_RS12615 (I6J34_12615)	recD2	2517085..2519505 (+)	2421	WP_046099239.1	ATP-dependent RecD-like DNA helicase	Machinery gene
I6J34_RS12620 (I6J34_12620)	alaS	2519812..2522442 (+)	2631	WP_046099240.1	alanine--tRNA ligase	-
I6J34_RS12625 (I6J34_12625)	-	2522511..2522774 (+)	264	WP_015900476.1	IreB family regulatory phosphoprotein	-
I6J34_RS12630 (I6J34_12630)	ruvX	2522777..2523205 (+)	429	WP_015900475.1	Holliday junction resolvase RuvX	-
I6J34_RS12635 (I6J34_12635)	-	2523228..2523539 (+)	312	WP_046099241.1	DUF1292 domain-containing protein	-
I6J34_RS12640 (I6J34_12640)	-	2523832..2524473 (+)	642	WP_046099242.1	O-methyltransferase	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 90908.05 Da
• Isoelectric Point: 4.4138

>NTDB_id=535723 I6J34_RS12615 WP_046099239.1 2517085..2519505(+) (recD2) [Staphylococcus carnosus strain FDAARGOS_1204]
MNNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTVVGFFPEIVEGDVYTFKGQAVTHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVDTLGENAINKILDDEQALAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLTEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAQLLEEMIVQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQMHIGEIEDVNNVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKQEDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIQGIFW
ARENELNKDVLVVDFDGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGAETSESSDETESDADTNTVIAERNSKVIELSEETLFEIDPMIGMGNVTPY
SFANEK

Nucleotide

• Length: 2421 bp

>NTDB_id=535723 I6J34_RS12615 WP_046099239.1 2517085..2519505(+) (recD2) [Staphylococcus carnosus strain FDAARGOS_1204]
TTGAACAACCCTACATTATTTGATTATTCAATGGTCAAAGGTACAGTTGAAGCCATTTTGTTTCAAAACAAAGAAAACTT
CTACACTGTACTCAAAGTAGATCCGATCGAGACAAATGAAGAATTTGATAGTATGCCGACCGTTGTAGGGTTCTTTCCTG
AAATTGTGGAAGGAGATGTTTATACTTTTAAAGGTCAAGCTGTCACTCATCCTCGATATGGTAAACAATTAAAAGCAGAG
ACATTTGAAAAAGAATTACCTCAGACCAAAGATGCGATTGTAAGTTATCTCTCAAGTGATCTATTCAAAGGCATCGGAAA
GAAAACAGCCGAAAATATTGTAGATACACTTGGGGAAAATGCGATCAATAAAATTCTTGATGATGAACAAGCTTTAGCAG
AAGTACCGCACCTGTCTAAGAAAAAGCAAAAACAAATTGCAGAACAAATTTACAGTAATCAAGAAGTTGAAAAAATCATG
ATTCGCCTGCATGATTTAGGATTCGGTCCTAAATTATCGATGAATATCTATCAAGTCTACCAAGTTGAGACTCTTACTGA
AATTGAGAAAAATCCGTATCAGCTTGTCTATGATGTTAAAGGGGTCGGCTTTAATAAAGCTGATACATTAGCTAAAAATT
TAGGGATAGAATATAACGATCCTGAAAGATTAAAAGCTGGATTATTATATACAATTGAAGAAGAATGCATTAAACAAGGA
CATACGTACTTGCCGAAAGATTATGTGATTGAAGCATCTCAAGATACATTATCTCAAGTACATAGTGAATCAATTGATGC
TCAATTGTTAGAAGAGATGATTGTACAGTTGACTGAAGAAGAGAAGCTTGTAGAAGCAGATGAAACACTCTCTGTACCAA
GTTTATATTATTCGGAAGTTAAAAGTGTCCAAAATTTGTATCGAATTGAAGCTCATCAAACAAAACTAGAAACAATTGAA
CAATCAGACTTGCAGATGCATATCGGAGAAATAGAAGATGTTAATAACGTAAATTATGCTGCATCTCAAAAAGAAGCACT
TGAAACTGCTATTAATTCTAAAGTCATGTTGCTAACAGGTGGGCCAGGTACAGGTAAAACAACAGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGACTGTCTCTTGATTATGATGATTATAACGAAGATGATTATCCTGTCGCTTTAGCA
GCACCAACAGGCAGAGCAGCTAAAAGACTGCAAGAATCTACGGGATTAGAAGCCATGACGATACATCGGTTAATCGGTTG
GAGTCAAGAAACAAAACCAGAAGACGTTCTTGAAAATGAAATTAACGCTAAGCTGATTATTATCGACGAAATGTCGATGG
TCGACACCTGGTTATTCCACCAATTTTTAAATGCGGTGCCAATTGATGCACAAGTTATCCTAGTAGGTGATGAAGATCAA
TTACCTTCAGTAGGTCCAGGACAAGTATTTAAAGATTTAATTGATTCTAAAGTAGTGCCGCGTGTGAACTTGACTGAAGT
TTATCGTCAGCAAGACGGATCAAGCATTATCGAATTAGCACATAAAATGAAATTAGGGCAGCCGATTGATATTACACAAC
GTTTTCATGACCGCAGCTTTATTCCGTGCAGTGCAGATCAAATACCGGATGTAGTTAATAAAGTGGTCACTTCTGCTGTG
AAAAAAGGTTACGATATGAGTGATATTCAGGTACTTGCACCGATGTACAGAGGTAGTGCTGGTATTAAACGATTGAATAA
AGTACTTCAAGACATTTTAAACCCTAAACAAGAAGATACACGTGAAATTGAATTCGGCGATGTCGTTTTTCGAAAAGGCG
ATAAAGTACTCCAATTAGTTAATCGACCGAGTGATAATATTTTCAATGGAGATATCGGGGTGATTCAAGGTATCTTTTGG
GCAAGAGAAAATGAATTGAATAAAGACGTATTAGTCGTTGATTTTGACGGTAATGAAATTACATTTACCAAACAAGATAT
GATGGAACTTACGCATGCCTATTGTACTTCCATTCATAAAGCACAAGGATCAGAATTTCCAATTGTGATAATGCCGATAG
TTAAACAATATTACCGCATGCTGCAAAGACCGATTATTTATACTGGTTTGACACGAGCAAAACAATCTTTGGTTTTTCTA
GGTGACAGCCAAGCTTTCGATATCGGCATGCAAACCTATGGCCAAGTGCGAATGACACGTATGGCACAGTTATTGCGCGA
TTACTTCGGTGCAGAAACAAGTGAATCATCTGATGAAACCGAAAGCGATGCAGACACAAATACAGTCATTGCTGAGCGGA
ATTCAAAAGTTATTGAGTTATCGGAAGAAACATTATTTGAAATTGACCCTATGATTGGCATGGGCAATGTCACACCTTAT
AGCTTTGCGAATGAAAAATAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• AAA domain (AAA_30) (339-544)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.993	100	0.51