Detailed information NTG0535642

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: I6J35_RS04630
• Genome accession: NZ_CP069567
• Coordinates: 924891..927311 (+)
• Length: 806 a.a.
• NCBI ID: WP_047131822.1
• Uniprot ID: A0A143P8G5
• Organism: Staphylococcus condimenti strain FDAARGOS_1205
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 919891..932311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J35_RS04600 (I6J35_04600)	-	920197..920361 (+)	165	WP_156483151.1	hypothetical protein	-
I6J35_RS04605 (I6J35_04605)	-	920435..920641 (+)	207	WP_047131827.1	CsbD family protein	-
I6J35_RS04610 (I6J35_04610)	-	920677..921675 (-)	999	WP_047131826.1	LLM class flavin-dependent oxidoreductase	-
I6J35_RS04615 (I6J35_04615)	-	921857..922996 (+)	1140	WP_047131825.1	cysteine desulfurase family protein	-
I6J35_RS04620 (I6J35_04620)	mnmA	922999..924111 (+)	1113	WP_047131824.1	tRNA 2-thiouridine(34) synthase MnmA	-
I6J35_RS04625 (I6J35_04625)	-	924219..924887 (+)	669	WP_047131823.1	tetratricopeptide repeat protein	-
I6J35_RS04630 (I6J35_04630)	recD2	924891..927311 (+)	2421	WP_047131822.1	ATP-dependent RecD-like DNA helicase	Machinery gene
I6J35_RS04635 (I6J35_04635)	alaS	927619..930249 (+)	2631	WP_204108012.1	alanine--tRNA ligase	-
I6J35_RS04640 (I6J35_04640)	-	930318..930581 (+)	264	WP_047131820.1	IreB family regulatory phosphoprotein	-
I6J35_RS04645 (I6J35_04645)	ruvX	930584..931012 (+)	429	WP_047131819.1	Holliday junction resolvase RuvX	-
I6J35_RS04650 (I6J35_04650)	-	931035..931346 (+)	312	WP_047131818.1	DUF1292 domain-containing protein	-
I6J35_RS04655 (I6J35_04655)	-	931634..932275 (+)	642	WP_047131817.1	O-methyltransferase	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 90919.16 Da
• Isoelectric Point: 4.4085

>NTDB_id=535642 I6J35_RS04630 WP_047131822.1 924891..927311(+) (recD2) [Staphylococcus condimenti strain FDAARGOS_1205]
MSNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTVVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVDTLGENAINKILDDEQVLAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLTEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAQLLEEMIVQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQIHIGEIEDVNNVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKQEDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIQGIFW
AKENELNKDVLVVDFDGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPVVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGTEMSETTNETENDIDTNEIIAEQNSKVIALSEETIFEIDPMIGMGNVTPY
SFANDK

Nucleotide

• Length: 2421 bp

>NTDB_id=535642 I6J35_RS04630 WP_047131822.1 924891..927311(+) (recD2) [Staphylococcus condimenti strain FDAARGOS_1205]
TTGAGCAACCCTACATTATTTGATTATTCAATGGTCAAAGGTACAGTTGAAGCTATTCTTTTTCAAAATAAAGAAAACTT
TTACACTGTATTAAAAGTAGATCCAATCGAGACAAATGAAGAATTTGATAGTATGCCGACCGTTGTAGGGTTCTTTCCTG
AAATTGCGGAAGGAGATGTTTATACTTTTAAAGGTCAAGCTGTCACTCACCCTCGATATGGCAAGCAATTAAAAGCTGAG
ACCTTTGAAAAAGAACTGCCGCAAACTAAAGATGCGATTGTAAGTTATCTCTCAAGTGATTTATTTAAAGGCATCGGGAA
AAAAACAGCAGAAAATATCGTCGACACACTTGGTGAAAATGCGATTAATAAAATTCTTGATGATGAACAAGTATTGGCAG
AAGTACCGCATCTGTCTAAGAAAAAGCAAAAACAAATTGCAGAACAAATTTACAGTAATCAAGAAGTTGAAAAAATCATG
ATTCGTCTGCATGATTTAGGTTTCGGTCCTAAATTATCGATGAATATTTACCAAGTTTACCAAGTTGAAACACTCACTGA
AATTGAGAAGAATCCGTATCAGCTTGTCTATGATGTTAAAGGGGTCGGTTTTAATAAAGCTGATACTTTAGCTAAGAATC
TTGGTATTGAATACAATGATCCTGAACGATTAAAAGCAGGATTATTATATACAATTGAGGAAGAATGTATTAAACAAGGA
CATACGTATTTGCCGAAAGATTATGTGATTGAAGCTTCACAAGATACTTTATCTCAAGTGCATAGCGAATCCATTGATGC
CCAATTGTTGGAAGAGATGATTGTACAGCTGACTGAAGAAGAAAAGTTGGTAGAAGCAGATGAAACACTTTCTGTACCAA
GTTTATATTATTCAGAAGTTAAAAGTGTACAAAATTTATATCGCATTGAAGCACATCAAACAAAACTAGAGACAATTGAA
CAATCAGACCTGCAGATACACATTGGAGAAATTGAAGATGTCAATAATGTAAATTATGCTGCATCTCAAAAAGAAGCACT
TGAAACTGCTATAAATTCTAAAGTCATGCTGTTAACAGGCGGGCCTGGTACAGGTAAAACAACTGTGATTAAAGGTATTG
TAGAATTATATGCTGAAATCCATGGTCTGTCTCTTGATTATGATGATTATAACGAAGATGATTATCCTGTCGCTTTAGCA
GCACCAACAGGCCGAGCTGCTAAAAGATTGCAAGAATCTACGGGATTAGAAGCTATGACGATACATCGATTAATCGGTTG
GAGCCAAGAAACAAAACCAGAAGACGTTCTTGAAAATGAAATCAACGCTAAGCTGATTATTATCGACGAAATGTCTATGG
TCGACACATGGCTGTTCCACCAATTTTTAAATGCCGTTCCAATTGATGCGCAAGTCATCTTAGTAGGAGATGAAGATCAA
TTACCTTCAGTAGGTCCAGGGCAAGTATTTAAAGATTTAATTGATTCTAAAGTAGTGCCGCGTGTGAATCTAACTGAAGT
TTATCGCCAACAAGACGGTTCTAGTATTATTGAATTAGCACATAAAATGAAACTGGGACAGCCAATTGATATTACACAAC
GATTTCATGATCGCAGTTTTATACCATGCAGTGCCGATCAAATACCGGATGTAGTTAATAAAGTGGTAACCTCAGCTGTG
AAAAAAGGTTATGATATGAGTGATATTCAAGTACTTGCACCGATGTACAGAGGCAGTGCTGGTATTAAGCGTCTGAATAA
AGTACTTCAAGACATTTTAAATCCTAAACAAGAAGATACACGTGAAATCGAATTCGGAGATGTTGTTTTTCGAAAAGGCG
ATAAAGTACTGCAATTAGTTAATCGACCAAGCGATAATATTTTTAACGGAGATATTGGCGTCATTCAAGGTATCTTTTGG
GCAAAAGAAAATGAATTGAATAAAGATGTGTTAGTCGTTGATTTTGATGGAAATGAAATTACATTTACCAAACAAGATAT
GATGGAACTTACGCATGCTTATTGTACTTCCATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTGATAATGCCGGTAG
TCAAACAATATTACCGCATGCTGCAAAGACCGATTATTTATACAGGATTAACGCGAGCTAAACAATCTTTAGTTTTTCTA
GGCGACAGTCAAGCCTTTGATATTGGTATGCAAACCTATGGTCAAGTGCGGATGACACGTATGGCACAGCTATTGCGCGA
TTATTTCGGTACAGAAATGAGCGAAACAACAAATGAAACAGAAAATGATATAGATACAAACGAGATAATTGCAGAACAAA
ATTCAAAAGTCATTGCGTTATCAGAAGAAACAATATTTGAAATTGACCCGATGATTGGAATGGGTAATGTCACACCTTAT
AGTTTCGCGAATGATAAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

3D structure

• AlphaFold DB: A0A143P8G5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.365	100	0.514