Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6J86_RS09680 Genome accession   NZ_CP069451
Coordinates   2060945..2061574 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_1256     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2055945..2066574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J86_RS09660 (I6J86_09660) ycbZ 2056347..2058107 (-) 1761 WP_000156496.1 Lon protease family protein -
  I6J86_RS09665 (I6J86_09665) matP 2058293..2058745 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  I6J86_RS09670 (I6J86_09670) ompA 2058821..2059861 (-) 1041 WP_001313715.1 porin OmpA -
  I6J86_RS09675 (I6J86_09675) sulA 2060217..2060726 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  I6J86_RS09680 (I6J86_09680) sxy/tfoX 2060945..2061574 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I6J86_RS09685 (I6J86_09685) yccS 2061537..2063699 (-) 2163 WP_000875067.1 YccS family putative transporter -
  I6J86_RS09690 (I6J86_09690) yccF 2063709..2064155 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I6J86_RS09695 (I6J86_09695) helD 2064278..2066332 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=534825 I6J86_RS09680 WP_000839153.1 2060945..2061574(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1256]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=534825 I6J86_RS09680 WP_000839153.1 2060945..2061574(+) (sxy/tfoX) [Escherichia coli strain FDAARGOS_1256]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1