Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LDO71_RS00280 Genome accession   NZ_CP084297
Coordinates   60648..61913 (+) Length   421 a.a.
NCBI ID   WP_225546021.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55648..66913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS00250 (LDO71_00250) mutY 55817..56851 (-) 1035 WP_225546018.1 A/G-specific adenine glycosylase -
  LDO71_RS00255 (LDO71_00255) - 56992..57354 (-) 363 WP_225546019.1 HIT family protein -
  LDO71_RS00260 (LDO71_00260) - 57540..58277 (-) 738 WP_225546020.1 dienelactone hydrolase family protein -
  LDO71_RS00265 (LDO71_00265) - 58449..58607 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  LDO71_RS00270 (LDO71_00270) - 58802..59260 (+) 459 WP_002057482.1 YcgN family cysteine cluster protein -
  LDO71_RS00275 (LDO71_00275) - 59373..60542 (+) 1170 Protein_48 PQQ-dependent sugar dehydrogenase -
  LDO71_RS00280 (LDO71_00280) rarA 60648..61913 (+) 1266 WP_225546021.1 replication-associated recombination protein A Machinery gene
  LDO71_RS00285 (LDO71_00285) - 61929..62768 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  LDO71_RS00290 (LDO71_00290) - 63054..63257 (-) 204 WP_000418560.1 hypothetical protein -
  LDO71_RS00295 (LDO71_00295) purC 63450..64169 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  LDO71_RS00300 (LDO71_00300) - 64206..64808 (-) 603 WP_001177091.1 hypothetical protein -
  LDO71_RS00305 (LDO71_00305) dapA 64824..65717 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LDO71_RS00310 (LDO71_00310) pncA 66047..66691 (+) 645 WP_002072188.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46887.56 Da        Isoelectric Point: 6.0182

>NTDB_id=534742 LDO71_RS00280 WP_225546021.1 60648..61913(+) (rarA) [Acinetobacter baumannii strain LHC22-2]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQAQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=534742 LDO71_RS00280 WP_225546021.1 60648..61913(+) (rarA) [Acinetobacter baumannii strain LHC22-2]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCGCGCTGTCAGGTCTATACCTTAAACAGTCTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTACAAAATGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGAGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGCACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375