Detailed information NTG0534589

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDB15_RS02650
• Genome accession: NZ_CP084207
• Coordinates: 567079..568104 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC2648-R1-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 562079..573104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDB15_RS02630 (LDB15_02630)	metJ	563140..563457 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LDB15_RS02635 (LDB15_02635)	yiiX	563641..564249 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LDB15_RS02640 (LDB15_02640)	rpmE	564310..564522 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LDB15_RS02645 (LDB15_02645)	priA	564725..566923 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LDB15_RS02650 (LDB15_02650)	cytR	567079..568104 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LDB15_RS02655 (LDB15_02655)	ftsN	568196..569155 (+)	960	WP_000068828.1	cell division protein FtsN	-
LDB15_RS02660 (LDB15_02660)	hslV	569248..569778 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LDB15_RS02665 (LDB15_02665)	hslU	569788..571119 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LDB15_RS02670 (LDB15_02670)	menA	571186..572112 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDB15_RS02675 (LDB15_02675)	rraA	572205..572690 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LDB15_RS02680 (LDB15_02680)	zapB	572775..573020 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=534589 LDB15_RS02650 WP_000644904.1 567079..568104(+) (cytR) [Escherichia coli strain EC2648-R1-1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=534589 LDB15_RS02650 WP_000644904.1 567079..568104(+) (cytR) [Escherichia coli strain EC2648-R1-1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628