Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   JQM34_RS08350 Genome accession   NZ_CP069427
Coordinates   1726296..1728065 (+) Length   589 a.a.
NCBI ID   WP_129313488.1    Uniprot ID   A0A4Q2FMD5
Organism   Streptococcus oralis strain SF100     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1685728..1729815 1726296..1728065 within 0


Gene organization within MGE regions


Location: 1685728..1729815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS08045 (JQM34_0001639) recA 1685728..1686879 (+) 1152 WP_001085517.1 recombinase RecA Machinery gene
  JQM34_RS08050 (JQM34_0001640) - 1687049..1687243 (+) 195 WP_000415528.1 PspC domain-containing protein -
  JQM34_RS08055 (JQM34_0001641) - 1687373..1687927 (-) 555 WP_000060286.1 GNAT family N-acetyltransferase -
  JQM34_RS08060 (JQM34_0001642) - 1688037..1689407 (+) 1371 WP_200370823.1 MATE family efflux transporter -
  JQM34_RS08065 (JQM34_0001643) - 1689504..1690220 (+) 717 WP_000532894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  JQM34_RS08070 (JQM34_0001644) - 1690308..1691429 (-) 1122 WP_233848250.1 site-specific integrase -
  JQM34_RS09890 - 1691820..1691996 (-) 177 Protein_1574 restriction endonuclease -
  JQM34_RS08080 - 1692009..1692389 (-) 381 WP_015971699.1 ImmA/IrrE family metallo-endopeptidase -
  JQM34_RS08085 (JQM34_0001647) - 1692393..1692746 (-) 354 WP_015971700.1 helix-turn-helix transcriptional regulator -
  JQM34_RS09855 (JQM34_0001648) - 1693034..1693162 (+) 129 WP_015971701.1 hypothetical protein -
  JQM34_RS08090 - 1693177..1693389 (+) 213 WP_015971702.1 hypothetical protein -
  JQM34_RS08095 (JQM34_0001649) - 1693365..1694045 (-) 681 WP_015971703.1 DUF4145 domain-containing protein -
  JQM34_RS08100 (JQM34_0001650) - 1694100..1694309 (+) 210 WP_015971704.1 helix-turn-helix transcriptional regulator -
  JQM34_RS08105 (JQM34_0001651) - 1694313..1694510 (+) 198 WP_015971705.1 hypothetical protein -
  JQM34_RS08110 (JQM34_0001652) - 1694627..1695286 (-) 660 WP_015971707.1 hypothetical protein -
  JQM34_RS08115 (JQM34_0001654) - 1695343..1695573 (+) 231 WP_015971708.1 hypothetical protein -
  JQM34_RS08120 (JQM34_0001655) - 1695686..1696363 (-) 678 WP_015971709.1 DUF4145 domain-containing protein -
  JQM34_RS08125 (JQM34_0001657) - 1696418..1697137 (+) 720 WP_015971710.1 ORF6C domain-containing protein -
  JQM34_RS08130 (JQM34_0001658) - 1697220..1697492 (+) 273 WP_015971711.1 hypothetical protein -
  JQM34_RS08135 (JQM34_0001659) - 1697542..1697799 (+) 258 WP_015971712.1 hypothetical protein -
  JQM34_RS08140 (JQM34_0001660) - 1697815..1698243 (+) 429 WP_015971713.1 hypothetical protein -
  JQM34_RS08145 (JQM34_0001661) - 1698263..1699060 (+) 798 WP_015971714.1 phage replisome organizer N-terminal domain-containing protein -
  JQM34_RS08150 (JQM34_0001662) - 1699048..1699206 (+) 159 WP_015971715.1 hypothetical protein -
  JQM34_RS08155 (JQM34_0001663) - 1699200..1699970 (+) 771 WP_015971716.1 ATP-binding protein -
  JQM34_RS09810 - 1699985..1700215 (+) 231 Protein_1592 hypothetical protein -
  JQM34_RS08160 (JQM34_0001664) - 1700317..1700790 (+) 474 WP_015971717.1 Cas9 inhibitor AcrIIA9 family protein -
  JQM34_RS08165 (JQM34_0001665) - 1700790..1702148 (+) 1359 WP_200370824.1 PcfJ domain-containing protein -
  JQM34_RS08170 (JQM34_0001666) - 1702168..1702494 (+) 327 WP_015971719.1 hypothetical protein -
  JQM34_RS08175 (JQM34_0001667) - 1702528..1702788 (+) 261 WP_015971720.1 hypothetical protein -
  JQM34_RS08180 - 1702785..1703126 (+) 342 WP_015971721.1 HNH endonuclease signature motif containing protein -
  JQM34_RS08185 (JQM34_0001669) - 1703123..1703383 (+) 261 WP_015971722.1 DUF1372 family protein -
  JQM34_RS08190 (JQM34_0001670) - 1703380..1703859 (+) 480 WP_233848254.1 hypothetical protein -
  JQM34_RS08195 (JQM34_0001671) - 1703880..1704131 (+) 252 WP_015971724.1 DUF3310 domain-containing protein -
  JQM34_RS08200 (JQM34_0001672) - 1704109..1704273 (+) 165 WP_015971725.1 hypothetical protein -
  JQM34_RS08205 (JQM34_0001673) - 1704293..1704718 (+) 426 WP_015971726.1 ArpU family phage packaging/lysis transcriptional regulator -
  JQM34_RS08210 (JQM34_0001674) - 1704831..1705397 (+) 567 WP_015971727.1 site-specific integrase -
  JQM34_RS08215 - 1705609..1705953 (+) 345 WP_015971728.1 HNH endonuclease signature motif containing protein -
  JQM34_RS08220 (JQM34_0001675) - 1706158..1707426 (+) 1269 WP_200370828.1 phage portal protein -
  JQM34_RS08225 (JQM34_0001676) - 1707416..1708621 (+) 1206 WP_200370831.1 hypothetical protein -
  JQM34_RS08230 (JQM34_0001677) - 1708611..1708790 (+) 180 WP_015971731.1 CPCC family cysteine-rich protein -
  JQM34_RS08235 (JQM34_0001678) - 1708953..1709204 (+) 252 WP_015971732.1 DUF6275 family protein -
  JQM34_RS08240 (JQM34_0001679) - 1709268..1710680 (+) 1413 WP_200370832.1 terminase -
  JQM34_RS08245 (JQM34_0001680) - 1710761..1711228 (+) 468 WP_200370833.1 DUF4355 domain-containing protein -
  JQM34_RS08250 (JQM34_0001681) - 1711241..1712143 (+) 903 WP_015971735.1 phage major capsid protein -
  JQM34_RS08255 (JQM34_0001682) - 1712146..1712367 (+) 222 WP_015971736.1 HeH/LEM domain-containing protein -
  JQM34_RS08260 (JQM34_0001683) - 1712388..1712783 (+) 396 WP_015971737.1 phage Gp19/Gp15/Gp42 family protein -
  JQM34_RS08265 (JQM34_0001684) - 1712770..1713108 (+) 339 WP_015971738.1 hypothetical protein -
  JQM34_RS08270 (JQM34_0001685) - 1713101..1713337 (+) 237 WP_015971739.1 hypothetical protein -
  JQM34_RS08275 (JQM34_0001686) - 1713338..1713673 (+) 336 WP_015971740.1 hypothetical protein -
  JQM34_RS08280 (JQM34_0001687) - 1713689..1714240 (+) 552 WP_015971686.1 hypothetical protein -
  JQM34_RS08285 (JQM34_0001688) - 1714291..1714554 (+) 264 WP_200371608.1 hypothetical protein -
  JQM34_RS08290 (JQM34_0001689) - 1714569..1714949 (+) 381 WP_015971688.1 DUF5361 domain-containing protein -
  JQM34_RS08295 (JQM34_0001690) - 1714949..1717972 (+) 3024 WP_015971689.1 PblA -
  JQM34_RS08300 (JQM34_0001691) - 1717972..1718667 (+) 696 WP_015971690.1 hypothetical protein -
  JQM34_RS08305 (JQM34_0001692) - 1718664..1721852 (+) 3189 WP_015971691.1 phage tail spike protein -
  JQM34_RS08310 (JQM34_0001693) - 1721849..1722058 (+) 210 WP_015971692.1 hypothetical protein -
  JQM34_RS08315 (JQM34_0001694) - 1722048..1722695 (+) 648 WP_015971693.1 hypothetical protein -
  JQM34_RS08320 (JQM34_0001695) - 1722712..1723128 (+) 417 WP_015971694.1 hypothetical protein -
  JQM34_RS08325 (JQM34_0001696) - 1723115..1723447 (+) 333 WP_015971695.1 phage holin -
  JQM34_RS09860 - 1723450..1724336 (+) 887 Protein_1627 peptidoglycan amidohydrolase family protein -
  JQM34_RS08335 - 1724522..1724794 (+) 273 WP_200370834.1 hypothetical protein -
  JQM34_RS08340 (JQM34_0001699) - 1724954..1725658 (-) 705 WP_200370835.1 CD20-like domain-containing protein -
  JQM34_RS08345 (JQM34_0001701) - 1725851..1726312 (+) 462 WP_000360526.1 MarR family winged helix-turn-helix transcriptional regulator -
  JQM34_RS08350 (JQM34_0001702) rcrP 1726296..1728065 (+) 1770 WP_129313488.1 ABC transporter ATP-binding protein Regulator
  JQM34_RS08355 (JQM34_0001703) rcrQ 1728055..1729815 (+) 1761 WP_200370836.1 ABC transporter ATP-binding protein Regulator

Sequence


Protein


Download         Length: 589 a.a.        Molecular weight: 65266.56 Da        Isoelectric Point: 5.5689

>NTDB_id=534560 JQM34_RS08350 WP_129313488.1 1726296..1728065(+) (rcrP) [Streptococcus oralis strain SF100]
MKKLAKRIIGKEWGMIVLTILFTCFSVYLELEVPTYISQITELLGTSGTQLGELWSPAAKMMGLSLLAFMSSVAVGFFAS
HVAASYTTHLRSDIFNRVLDFSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTVLMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMAISSGLTLAIYWIGAYIINDASLTERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHAQTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSQESPLSEAAMWQALELAQSKAFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=534560 JQM34_RS08350 WP_129313488.1 1726296..1728065(+) (rcrP) [Streptococcus oralis strain SF100]
ATGAAGAAACTCGCTAAACGTATTATAGGAAAAGAGTGGGGAATGATCGTCCTTACGATTCTTTTCACTTGTTTCTCGGT
CTATCTCGAGTTAGAGGTACCGACCTACATTTCGCAAATTACAGAGTTACTGGGAACGTCTGGAACGCAGTTGGGTGAAC
TCTGGTCACCAGCTGCGAAGATGATGGGATTATCTCTCCTTGCCTTTATGTCGTCAGTAGCAGTTGGATTTTTCGCCTCC
CATGTTGCAGCGTCTTACACGACTCACTTGAGAAGCGATATTTTTAATCGAGTACTGGATTTTTCACAGACAGAGATTAA
ACGTTTTTCAATCCCCAGTCTTTTGACTCGGACGACCAATGATATCACACAGGTACAGATGCTCTTTACCATGGGATTAC
AGGTAGTGACTCGTGGGCCGATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGTAAGTCCGAATACTGGCTCTGGGCA
GTCGTTGTGGCTGTTATTGTGAATGTCTTGATGACCACCGTTCTCATGACTCTGGCCTTTCCAAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGCTTGACAGGGATTCGGGTTGTTCGTGCTTATAATGCTGAGG
ATTACCAAGATGAGAAATTTGAAGCAGCCAATGATGAAGTGACGCGTCTCAATCTCTTTGTCAATCGATTGATGGCGATT
ATGAACCCGATTATGATGGCAATTTCCAGTGGTTTGACCTTAGCTATTTACTGGATTGGTGCCTATATCATCAACGATGC
AAGTTTGACAGAACGTCTGCCACTCTTTAGTGATATGGTGGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGCTTCC
TTCTCATGGGAGCACTCTTTATCGTTCTTCCTCGTACCTTGGTTTCGGCAGGACGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATGCCCAGACAGCGGATCCTTCAGTTCAAGGACAAGTGGAATTCCGTGATGTGACTTT
CCGCTACTCTAAAAACTCAGAAGCAGTCGTGGAACATGTCACTTTCAAAGCAGAAGCGGGTCAAACCGTAGCCTTCATCG
GATCGACTGGATCAGGTAAGTCTACACTTGTCAACCTCTTGCCACGTTTTTACGACGTTTCTGATGGAGAAATCCTAGTG
GACGGAGTTAATGTGCAAGATTACGATTTGGAAGATTTGCGCAATAAGGTCGGCTATATTCCACAAAAAGCTGTACTCTT
TTCTGGAGATGTCAAGGGGAACTTGGACTTTGGTAAGAGTCAAGAAAGTCCTCTAAGTGAGGCTGCTATGTGGCAAGCTC
TTGAATTGGCCCAGTCTAAAGCATTTATCGAGGACAAGGAAGCAGGTCTTGCATCAGAAGTAGCCCAAGGTGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTGGCCATTGCACGCGCCTTGGCTCGTAAACCAGAGATTCTCATCTTTGATGATTC
CTTCTCAGCCTTGGACTACAAGACAGATCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAATCCATGACCAAACTCA
TCGTAGCGCAACGGATTTCTACCATTATGGACGCCGACCTGATCTTAGTTTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCAACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCAAAGGAGGAATTGGAACA
TGGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4Q2FMD5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.724

100

0.671