Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LB316_RS08135 Genome accession   NZ_CP084107
Coordinates   1680317..1681591 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675317..1686591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS08105 (LB316_08100) mnmA 1675519..1676637 (-) 1119 WP_000066093.1 tRNA 2-thiouridine(34) synthase MnmA -
  LB316_RS08110 (LB316_08105) - 1676638..1677780 (-) 1143 WP_000409169.1 cysteine desulfurase family protein -
  LB316_RS08115 (LB316_08110) - 1678092..1679105 (+) 1014 WP_000985896.1 LLM class flavin-dependent oxidoreductase -
  LB316_RS08120 (LB316_08115) - 1679342..1679488 (-) 147 WP_000009238.1 SAS049 family protein -
  LB316_RS08125 (LB316_08120) - 1679528..1679710 (-) 183 WP_000752909.1 CsbD family protein -
  LB316_RS08130 (LB316_08125) - 1679810..1680232 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  LB316_RS08135 (LB316_08130) rarA 1680317..1681591 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  LB316_RS08140 (LB316_08135) - 1681752..1682525 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  LB316_RS08145 (LB316_08140) - 1682525..1682653 (-) 129 WP_031927331.1 hypothetical protein -
  LB316_RS08155 (LB316_08150) aspS 1682986..1684752 (-) 1767 WP_000044796.1 aspartate--tRNA ligase -
  LB316_RS08160 (LB316_08155) hisS 1684768..1686030 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=534296 LB316_RS08135 WP_000102738.1 1680317..1681591(+) (rarA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=534296 LB316_RS08135 WP_000102738.1 1680317..1681591(+) (rarA) [Staphylococcus aureus strain CC49/ST49-MSSA]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGACGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCCGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686