Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LCF29_RS24675 Genome accession   NZ_CP084096
Coordinates   5156765..5157757 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli O78 strain 3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5151765..5162757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF29_RS24665 (LCF29_24665) yieP 5154657..5155349 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  LCF29_RS24670 (LCF29_24670) mdtD 5155372..5156799 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  LCF29_RS24675 (LCF29_24675) cytR 5156765..5157757 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  LCF29_RS24680 (LCF29_24680) rbsK 5157761..5158690 (-) 930 WP_024234399.1 ribokinase -
  LCF29_RS24685 (LCF29_24685) rbsB 5158816..5159706 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LCF29_RS24690 (LCF29_24690) rbsC 5159731..5160696 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LCF29_RS24695 (LCF29_24695) rbsA 5160701..5162206 (-) 1506 WP_000387778.1 ribose ABC transporter ATP-binding protein RbsA -
  LCF29_RS24700 (LCF29_24700) rbsD 5162214..5162633 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=534232 LCF29_RS24675 WP_000224470.1 5156765..5157757(-) (cytR) [Escherichia coli O78 strain 3]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=534232 LCF29_RS24675 WP_000224470.1 5156765..5157757(-) (cytR) [Escherichia coli O78 strain 3]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATAA
TGCAACGTTATCCGACAGTACCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCTCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364