Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JQ490_RS09265 Genome accession   NZ_CP069378
Coordinates   1880332..1881120 (-) Length   262 a.a.
NCBI ID   WP_150891119.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875332..1886120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ490_RS09245 (JQ490_09245) gatB 1875979..1877412 (-) 1434 WP_010905166.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  JQ490_RS09250 (JQ490_09250) - 1877452..1878054 (-) 603 WP_010905165.1 NUDIX hydrolase -
  JQ490_RS09255 (JQ490_09255) gatA 1878058..1879518 (-) 1461 WP_010905164.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  JQ490_RS09260 (JQ490_09260) gatC 1879518..1879823 (-) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  JQ490_RS09265 (JQ490_09265) codY 1880332..1881120 (-) 789 WP_150891119.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JQ490_RS09270 (JQ490_09270) - 1881272..1882486 (-) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  JQ490_RS09275 (JQ490_09275) - 1882555..1884138 (-) 1584 WP_010905162.1 APC family permease -
  JQ490_RS09280 (JQ490_09280) - 1884334..1884573 (-) 240 WP_010905161.1 hypothetical protein -
  JQ490_RS09285 (JQ490_09285) - 1884585..1884794 (-) 210 WP_010905160.1 hypothetical protein -
  JQ490_RS09290 (JQ490_09290) - 1884959..1885750 (-) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29142.48 Da        Isoelectric Point: 4.5254

>NTDB_id=534232 JQ490_RS09265 WP_150891119.1 1880332..1881120(-) (codY) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGIQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=534232 JQ490_RS09265 WP_150891119.1 1880332..1881120(-) (codY) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTATTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462