Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HMPREF1038_RS13280 Genome accession   NC_018630
Coordinates   1744882..1745913 (-) Length   343 a.a.
NCBI ID   WP_000506433.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739882..1750913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS09325 (HMPREF1038_01901) - 1740028..1740789 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  HMPREF1038_RS09330 (HMPREF1038_01902) ytpR 1740822..1741448 (-) 627 WP_000578316.1 YtpR family tRNA-binding protein -
  HMPREF1038_RS09335 (HMPREF1038_01903) - 1741464..1741781 (-) 318 WP_000615767.1 thioredoxin family protein -
  HMPREF1038_RS09340 (HMPREF1038_01904) - 1741778..1742077 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  HMPREF1038_RS13275 - 1742275..1742355 (-) 81 WP_223200442.1 hypothetical protein -
  HMPREF1038_RS09345 (HMPREF1038_01905) - 1742362..1742553 (-) 192 WP_001843938.1 cell wall-binding repeat protein -
  HMPREF1038_RS09350 (HMPREF1038_01906) - 1742714..1743388 (-) 675 WP_000725748.1 LiaF transmembrane domain-containing protein -
  HMPREF1038_RS09355 (HMPREF1038_01907) - 1743394..1743840 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  HMPREF1038_RS09360 (HMPREF1038_01908) - 1743954..1744457 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  HMPREF1038_RS09365 (HMPREF1038_01909) - 1744454..1744816 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  HMPREF1038_RS13280 (HMPREF1038_01910) rcrQ 1744882..1745913 (-) 1032 WP_000506433.1 ABC transporter ATP-binding protein Regulator
  HMPREF1038_RS13285 (HMPREF1038_01911) rcrP 1745920..1746729 (-) 810 WP_000601686.1 ABC transporter permease Regulator
  HMPREF1038_RS13290 (HMPREF1038_01912) - 1746746..1747217 (-) 472 Protein_1774 MarR family winged helix-turn-helix transcriptional regulator -
  HMPREF1038_RS09385 (HMPREF1038_01914) - 1747341..1748057 (-) 717 WP_000532880.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HMPREF1038_RS09390 (HMPREF1038_01915) ply 1748938..1750353 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  HMPREF1038_RS09395 (HMPREF1038_01916) - 1750364..1750774 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37966.20 Da        Isoelectric Point: 4.5159

>NTDB_id=53393 HMPREF1038_RS13280 WP_000506433.1 1744882..1745913(-) (rcrQ) [Streptococcus pneumoniae gamPNI0373]
MGFLLMGALFIVLPRTMVSAKRINQVLYLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=53393 HMPREF1038_RS13280 WP_000506433.1 1744882..1745913(-) (rcrQ) [Streptococcus pneumoniae gamPNI0373]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
ATATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment