Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JOJ89_RS15170 Genome accession   NZ_CP069296
Coordinates   2943446..2945788 (-) Length   780 a.a.
NCBI ID   WP_203288239.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2938446..2950788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS15155 dtd 2940100..2940543 (-) 444 WP_203288238.1 D-aminoacyl-tRNA deacylase -
  JOJ89_RS15160 - 2940560..2942752 (-) 2193 WP_029279436.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  JOJ89_RS15165 - 2942917..2943429 (-) 513 WP_029279434.1 adenine phosphoribosyltransferase -
  JOJ89_RS15170 recJ 2943446..2945788 (-) 2343 WP_203288239.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JOJ89_RS15175 - 2946386..2946730 (-) 345 WP_203288241.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  JOJ89_RS15180 - 2946920..2947354 (-) 435 WP_029279428.1 cell wall hydrolase -
  JOJ89_RS15185 secDF 2947467..2949716 (-) 2250 WP_203288243.1 protein translocase subunit SecDF -
  JOJ89_RS15190 - 2949754..2950050 (-) 297 WP_029279425.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 86898.00 Da        Isoelectric Point: 5.4884

>NTDB_id=533407 JOJ89_RS15170 WP_203288239.1 2943446..2945788(-) (recJ) [Metabacillus sp. cB07]
MLKAKNRWDVHEHHPEKMNELMSTLNLTPLVASLLLNRGIESADAADQFLHIEKHGFHDPFTLLGMDKAVQRIHSAIEHG
EKILIFGDYDADGVSSTVVMLETLHSLGANADFYIPNRFTEGYGPNEPAFRKARENGYGLIITVDTGISAVNEAAFAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCTYAFKELAGVGVAFKLAHALSGTVPEHLLEIAAIGTIADLVPLHGENRLI
ARLGIQQMNRTERTGLKALLKAAGADGKEVNEETIGFAVGPRINAVGRLETADPAVRLLMSADSEEAAELAVYIDGLNKE
RQKIVSQITDEAIEQVETLYPADQHSVLVLAKEDWNPGVVGIVASRIVEKYYRPTIILCIDPEKGTAKGSARSIAGFDLF
ANLSECRDILPHFGGHPMAAGMTLELQHVDQLRDRLNNLASATLKEEDFIPIKTIDAACSLADVSVESIEKIAKLAPFGM
GNPKPLFLLESVQVGSMRKIGSDQTHLKLAVEQDQKQLDCIGFGFGHLHDHMAPLAKVSLVGELSINEWNNFRKPQLMIQ
DLAVNEWQLFDARGSRDLNKTLDKMKDKENVYVVFQKETLSMLKDSEQDIVYLEDEGSAEKIKGKYITLVDTPTSIERLD
ALFENVFPERIYAVFHQHTDHFFATIPTRDHFKWYYGFLKQKETFDLKKHAEALARHKGWSSETINFMSQVFFDLEFATI
DNGIISVNHQPPKRDLSESSSYSAKLSQLELENTLLYSSYQDLKKWFDDRMKQSKALVNA

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=533407 JOJ89_RS15170 WP_203288239.1 2943446..2945788(-) (recJ) [Metabacillus sp. cB07]
TTGCTGAAAGCAAAGAACAGATGGGATGTTCACGAACACCATCCCGAAAAAATGAACGAATTGATGAGTACATTGAATCT
TACGCCTCTGGTAGCTTCACTTTTGCTTAACCGGGGAATTGAATCGGCTGATGCGGCCGATCAGTTTCTTCACATAGAAA
AGCACGGCTTTCACGATCCATTTACACTGCTCGGCATGGATAAAGCTGTGCAGCGTATTCACAGCGCCATTGAGCATGGG
GAAAAAATTCTGATTTTCGGAGATTATGACGCGGACGGCGTAAGCTCGACGGTCGTCATGCTTGAGACGCTTCATTCACT
TGGAGCCAATGCCGATTTTTATATTCCAAACCGGTTCACCGAGGGCTACGGTCCGAATGAACCTGCTTTCCGCAAAGCCC
GTGAAAATGGCTACGGGCTGATTATTACGGTTGATACAGGAATTTCTGCTGTTAACGAAGCGGCTTTTGCAAAAGAGCTT
GGAGTCGATCTGATTATTACCGATCATCACGAACCAGGGCCGGTACTTCCGGATGCGTATGCCATCATCCATCCGAAGCA
GCCTGGCTGCACGTATGCATTTAAGGAGCTTGCTGGTGTAGGGGTTGCTTTTAAGCTTGCCCATGCGCTTTCAGGAACTG
TTCCGGAACACCTGCTTGAGATAGCAGCCATCGGTACAATTGCTGACCTTGTGCCCCTTCACGGGGAAAATCGTCTTATT
GCAAGATTGGGTATCCAGCAGATGAATCGGACAGAACGGACAGGATTAAAGGCACTTCTAAAAGCAGCAGGGGCTGACGG
GAAAGAAGTCAATGAGGAGACCATCGGTTTTGCGGTCGGACCCCGCATCAATGCAGTCGGACGCCTTGAAACAGCAGATC
CCGCTGTCCGCCTCCTGATGTCTGCGGACAGTGAGGAAGCGGCAGAGCTTGCCGTTTACATCGACGGCTTAAACAAAGAG
AGACAGAAAATTGTTTCGCAGATTACAGACGAAGCGATCGAACAGGTTGAGACCCTGTACCCAGCAGATCAGCATTCTGT
GCTCGTCCTAGCGAAAGAAGACTGGAATCCGGGTGTCGTGGGAATTGTAGCGTCAAGGATAGTGGAAAAATACTACAGAC
CGACCATTATTCTGTGCATTGATCCTGAAAAAGGAACGGCAAAAGGTTCTGCCCGAAGCATCGCAGGGTTTGATCTGTTT
GCCAATCTTTCAGAATGCCGTGATATTCTGCCGCACTTTGGCGGTCACCCAATGGCAGCAGGCATGACGCTTGAGCTCCA
GCATGTCGACCAGCTGAGAGACAGATTAAATAATCTTGCCTCCGCTACGCTGAAAGAAGAGGATTTTATTCCGATAAAAA
CCATTGATGCCGCATGCAGTCTTGCTGACGTTTCTGTGGAGTCGATTGAGAAAATAGCGAAGCTCGCCCCGTTTGGCATG
GGAAATCCAAAACCGCTGTTTTTGCTGGAGTCTGTACAAGTGGGGTCCATGAGAAAAATCGGTTCTGACCAGACCCACTT
AAAGCTTGCGGTGGAGCAGGATCAAAAGCAGCTTGACTGCATCGGGTTCGGTTTCGGGCATTTGCATGATCACATGGCGC
CGCTCGCAAAAGTGTCACTTGTCGGGGAATTGTCCATAAATGAATGGAACAATTTCAGAAAACCGCAGCTGATGATTCAG
GATCTTGCTGTAAATGAGTGGCAGCTGTTTGATGCAAGAGGATCGCGTGATCTGAATAAAACGCTCGATAAGATGAAGGA
TAAGGAAAACGTTTATGTTGTTTTTCAAAAAGAGACACTGTCAATGCTGAAGGATTCGGAGCAGGATATCGTTTATCTCG
AAGATGAGGGCTCTGCTGAAAAAATAAAAGGCAAGTACATCACCTTAGTTGATACCCCAACATCTATTGAACGTCTTGAC
GCACTTTTTGAAAATGTATTTCCTGAACGAATTTATGCAGTTTTTCATCAGCATACCGATCATTTTTTCGCCACCATTCC
GACAAGAGACCACTTCAAATGGTACTATGGCTTTCTGAAGCAAAAAGAAACATTTGACTTAAAAAAGCACGCAGAAGCCC
TTGCACGCCACAAAGGATGGTCAAGTGAAACAATCAATTTCATGTCACAGGTGTTTTTTGACTTAGAATTTGCTACAATA
GACAATGGCATTATTTCTGTCAATCATCAGCCGCCAAAAAGAGACCTCTCCGAATCTTCTTCGTATTCTGCCAAACTCAG
TCAGCTGGAGCTTGAGAATACGCTGCTGTATTCGTCGTACCAGGACTTGAAGAAGTGGTTTGATGATCGGATGAAACAAT
CGAAGGCGCTTGTCAATGCATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(316-438)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

57.4

99.615

0.572