Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JOJ89_RS15090 Genome accession   NZ_CP069296
Coordinates   2924947..2927322 (-) Length   791 a.a.
NCBI ID   WP_203288207.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2919947..2932322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS15070 - 2922895..2923956 (-) 1062 WP_203288205.1 AI-2E family transporter -
  JOJ89_RS15075 - 2924111..2924215 (-) 105 WP_152554737.1 DUF3918 domain-containing protein -
  JOJ89_RS15080 - 2924238..2924429 (-) 192 WP_029279465.1 hypothetical protein -
  JOJ89_RS15085 - 2924444..2924944 (-) 501 WP_081414170.1 PRC-barrel domain-containing protein -
  JOJ89_RS15090 recD2 2924947..2927322 (-) 2376 WP_203288207.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JOJ89_RS15095 - 2927338..2927991 (-) 654 WP_203288217.1 tetratricopeptide repeat protein -
  JOJ89_RS15100 mnmA 2928061..2929176 (-) 1116 WP_029279457.1 tRNA 2-thiouridine(34) synthase MnmA -
  JOJ89_RS15105 - 2929200..2930339 (-) 1140 WP_203288219.1 cysteine desulfurase family protein -
  JOJ89_RS15110 - 2930354..2930770 (-) 417 WP_029279454.1 Rrf2 family transcriptional regulator -
  JOJ89_RS15115 - 2930789..2931454 (-) 666 WP_203288222.1 YitT family protein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89262.21 Da        Isoelectric Point: 4.9838

>NTDB_id=533406 JOJ89_RS15090 WP_203288207.1 2924947..2927322(-) (recD2) [Metabacillus sp. cB07]
MQQQADLFQEQERFLKGKIITVIFQNEQNHYTVLKTEVLETSENIDQKEITVTGYFPLLHEDETYTFFGMVTQHPKFGQQ
FQAEHYRKEIPKTRDGVIQYLSSDLFKGIGRKTAEAIVDELGEGAISKMMEDPSLLDKVPKLGKDKAKLLLDQLKEHQGL
EQAMIILNQLGFGPQLSMKIYQAYQDRTVQIIQENPFQLVKDIEGIGFVRADELGSRMGLGGNHPERIKAACFYTIEHLC
LQEGHTYVSTEQLIVKAMDLLNQSNDMRVIETDISAQIIKLAEDRGIIIEEDRTYLPSLYFAEQGLVKSIQRVLLQTEYD
SLFPESEFLLSLGNLEERMNVQYASSQKEAIQTALMSPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLDPKDYKKEEPF
PISLVAPTGRAAKRMTEATGLPAVTIHRLLKWNGAEGFDHGEDNPIGAKLLIVDEMSMVDTWIAHQLFKALPEQIQVIMV
GDEDQLPSVGPGQVLRDLLESEAVPVVRLTDIYRQAEGSSIIELAHDIKKGRLPENLSAPTKDRSFIRCSGTQVKEVVEK
VIANAIKKGYTARDVQVLAPMYRGPAGIDQLNVMLQELFNPKSPSKREMKFGETVYRSGDKVLQLVNQPESNVYNGDIGE
IVSIFYAKENTEKEDMIVISFDGNEVTYTKSDFTQFTHAFCCSIHKSQGSEFPIVVVPVVKSYYRMLRRNLIYTAITRSK
QFLILCGEQDALLRGIENRDHLSRQTSLRMKLSQKQEEKQELESELPFGAADAMIGMEGITPYDFMEDSRI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=533406 JOJ89_RS15090 WP_203288207.1 2924947..2927322(-) (recD2) [Metabacillus sp. cB07]
GTGCAGCAACAGGCGGATCTGTTTCAGGAACAGGAACGGTTTCTAAAAGGCAAAATCATCACGGTTATTTTTCAGAATGA
GCAGAATCATTACACCGTCCTGAAGACGGAGGTTCTTGAAACGAGCGAAAACATTGATCAAAAAGAGATAACCGTGACAG
GCTATTTTCCGCTTCTGCATGAAGATGAAACGTACACCTTCTTTGGGATGGTCACGCAGCATCCAAAATTCGGCCAGCAG
TTTCAGGCAGAGCACTACAGAAAAGAGATACCTAAAACGAGAGACGGGGTCATCCAGTATCTCTCAAGTGATCTTTTCAA
AGGTATTGGGAGAAAAACGGCCGAAGCCATTGTGGACGAGCTTGGAGAAGGAGCCATTTCAAAAATGATGGAGGATCCCT
CCCTTCTTGATAAGGTCCCGAAACTTGGCAAAGACAAGGCGAAACTGCTGCTCGATCAGCTGAAGGAGCACCAGGGACTT
GAACAGGCCATGATTATCCTGAACCAGCTCGGATTTGGCCCGCAGTTGTCCATGAAAATTTATCAGGCCTATCAGGACAG
AACGGTACAGATCATCCAGGAGAACCCGTTTCAGCTCGTAAAGGATATTGAAGGCATCGGGTTTGTGCGGGCAGATGAAC
TGGGAAGCCGCATGGGGCTTGGGGGAAACCATCCAGAGCGAATCAAAGCAGCCTGCTTTTACACGATTGAGCACCTTTGC
CTTCAGGAAGGCCATACATATGTTTCAACCGAACAGCTTATTGTAAAAGCAATGGATCTCCTGAATCAGTCCAATGACAT
GAGAGTGATTGAAACAGATATTTCAGCACAGATTATTAAGCTTGCCGAAGACAGAGGCATCATCATTGAAGAGGACAGAA
CGTACTTGCCTTCGCTCTATTTTGCGGAGCAGGGGCTTGTGAAAAGCATTCAACGGGTCCTTCTTCAAACGGAGTATGAC
AGTCTTTTTCCCGAGTCAGAGTTTCTCCTGTCACTTGGAAACCTGGAGGAACGGATGAACGTTCAGTATGCTTCCAGTCA
GAAAGAGGCGATTCAGACAGCCTTGATGTCGCCGATGCTTCTTCTTACAGGAGGACCCGGAACAGGAAAAACGACCGTGA
TCAAGGGGATTGTCGAGCTTTATGCCGATCTGCACGGCTGTTCTCTTGACCCAAAGGATTATAAAAAAGAAGAGCCTTTT
CCAATTTCATTGGTCGCGCCTACCGGTCGTGCTGCAAAGCGGATGACAGAAGCGACGGGACTTCCTGCCGTCACGATTCA
CAGGCTGCTTAAATGGAACGGGGCAGAGGGCTTTGACCACGGCGAGGACAACCCGATTGGGGCCAAGCTTCTGATTGTGG
ATGAAATGTCCATGGTGGATACCTGGATTGCCCATCAGCTTTTTAAAGCCCTGCCTGAACAGATTCAGGTGATTATGGTA
GGGGATGAAGATCAGCTGCCTTCTGTTGGACCCGGCCAGGTTTTGCGGGATCTGCTTGAGTCAGAGGCCGTTCCAGTAGT
GCGCCTGACGGATATTTACAGACAGGCAGAGGGATCATCCATTATTGAGCTTGCCCATGATATCAAAAAAGGGAGGCTTC
CTGAAAACCTTTCCGCCCCGACGAAAGACCGGTCCTTTATCAGGTGCAGCGGCACTCAGGTAAAAGAAGTGGTGGAAAAG
GTTATTGCGAATGCTATTAAGAAAGGGTATACCGCACGCGATGTGCAGGTACTTGCCCCCATGTACAGAGGTCCTGCAGG
CATTGACCAGCTGAACGTGATGCTGCAGGAGCTGTTCAATCCCAAATCCCCCAGCAAACGGGAAATGAAATTCGGAGAAA
CGGTGTACCGTTCAGGAGATAAAGTGCTTCAGCTCGTCAATCAGCCTGAAAGCAATGTGTACAACGGGGATATCGGGGAG
ATTGTCTCCATCTTTTATGCGAAGGAAAACACAGAAAAAGAAGATATGATCGTCATTTCCTTTGACGGTAATGAAGTGAC
GTATACAAAATCAGATTTTACTCAGTTTACGCATGCGTTCTGCTGCTCCATCCATAAATCCCAGGGCAGCGAATTTCCTA
TTGTGGTTGTGCCGGTTGTGAAGAGCTACTACCGGATGCTAAGGCGGAACCTTATTTATACGGCCATCACCCGAAGTAAG
CAGTTTCTGATTCTTTGCGGAGAGCAGGATGCGCTTCTCAGGGGTATCGAAAACCGCGATCATCTGAGCCGGCAGACGTC
CCTTCGCATGAAGCTGTCGCAAAAGCAGGAAGAAAAACAGGAGCTCGAGTCAGAGCTTCCATTCGGCGCGGCAGATGCCA
TGATCGGAATGGAAGGCATTACCCCGTATGACTTTATGGAAGACAGCAGAATCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

68.507

100

0.69