Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JQN89_RS05425 Genome accession   NZ_CP069278
Coordinates   1223255..1225126 (-) Length   623 a.a.
NCBI ID   WP_203385289.1    Uniprot ID   -
Organism   Bifidobacterium longum strain HN001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218255..1230126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN89_RS05410 (JQN89_05410) - 1218504..1219922 (-) 1419 WP_011068650.1 MFS transporter -
  JQN89_RS05415 (JQN89_05415) - 1220004..1221050 (+) 1047 WP_165507036.1 FAD:protein FMN transferase -
  JQN89_RS05420 (JQN89_05420) rcrQ 1221203..1223041 (-) 1839 WP_203385287.1 ABC transporter ATP-binding protein Regulator
  JQN89_RS05425 (JQN89_05425) rcrP 1223255..1225126 (-) 1872 WP_203385289.1 ABC transporter ATP-binding protein Regulator
  JQN89_RS05430 (JQN89_05430) - 1225313..1225834 (-) 522 WP_041473941.1 MarR family winged helix-turn-helix transcriptional regulator -
  JQN89_RS05435 (JQN89_05435) - 1226171..1226515 (-) 345 WP_172633839.1 hypothetical protein -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68069.66 Da        Isoelectric Point: 5.3091

>NTDB_id=533255 JQN89_RS05425 WP_203385289.1 1223255..1225126(-) (rcrP) [Bifidobacterium longum strain HN001]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGESADVEMADTSTPAGRKREAALIAAGKAAEGADMPA
EQLNRIKAAADVAQASEFVERMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=533255 JQN89_RS05425 WP_203385289.1 1223255..1225126(-) (rcrP) [Bifidobacterium longum strain HN001]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCAT
TCATCGGTTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGACCAGCCGGGCGAATCGGCGGACGTCGAGATGGCGGACA
CCTCCACTCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATGCCGGCC
GAGCAGCTGAATCGCATCAAGGCCGCGGCCGACGTGGCCCAGGCCAGCGAATTCGTGGAGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGATCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATATCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(60-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.341

100

0.491