Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   U722_RS04010 Genome accession   NC_023073
Coordinates   834207..836024 (+) Length   605 a.a.
NCBI ID   WP_024085027.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 829207..841024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS03995 (U722_04175) - 829991..830752 (+) 762 WP_003155531.1 MurR/RpiR family transcriptional regulator -
  U722_RS04000 (U722_04180) - 830769..832355 (+) 1587 WP_024085025.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  U722_RS04005 (U722_04185) - 832493..834226 (+) 1734 WP_024085026.1 ABC transporter ATP-binding protein -
  U722_RS04010 (U722_04190) rcrQ 834207..836024 (+) 1818 WP_024085027.1 ABC transporter ATP-binding protein Regulator
  U722_RS04015 (U722_04195) - 836192..836596 (+) 405 WP_003155526.1 DoxX family protein -
  U722_RS04020 (U722_04200) - 836613..837470 (+) 858 WP_024085028.1 VOC family protein -
  U722_RS04025 (U722_04205) cyoE 837848..838795 (+) 948 WP_024085029.1 heme o synthase -
  U722_RS04030 (U722_04210) - 838833..839384 (-) 552 WP_024085030.1 PadR family transcriptional regulator -
  U722_RS04035 (U722_04220) - 839618..840220 (+) 603 WP_003155520.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67476.14 Da        Isoelectric Point: 9.5659

>NTDB_id=53316 U722_RS04010 WP_024085027.1 834207..836024(+) (rcrQ) [Bacillus amyloliquefaciens LFB112]
MEKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHATHQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=53316 U722_RS04010 WP_024085027.1 834207..836024(+) (rcrQ) [Bacillus amyloliquefaciens LFB112]
GTGGAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCGTATGTAGCCGAAAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCAATTGATCATTTTATCGTCGGA
CGGACGACGGACGGATTGGCGGGTGTACTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTCACCCATCTGCATGAGCTGC
CGATACCGTTTTTTGATAAACAGCGCCTCGGCGATTTGATGAGCCGGGTTACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTCC
TGTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTACAATCATCAGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCGATCGGTTCCATTGTCGTATTCGCAGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTGGCGAACCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAGCGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGACGCACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCCAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGGTCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGATGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAGAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment