Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K9O95_RS19245 Genome accession   NZ_CP083701
Coordinates   3955605..3956369 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain SUISSEKPC3NDM5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3950605..3961369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O95_RS19235 (K9O95_19245) nikR 3954395..3954796 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  K9O95_RS19240 (K9O95_19250) nikE 3954802..3955608 (-) 807 WP_224451469.1 nickel import ATP-binding protein NikE -
  K9O95_RS19245 (K9O95_19255) amiE 3955605..3956369 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  K9O95_RS19250 (K9O95_19260) nikC 3956369..3957202 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  K9O95_RS19255 (K9O95_19265) nikB 3957199..3958143 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  K9O95_RS19260 (K9O95_19270) nikA 3958143..3959717 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  K9O95_RS19265 (K9O95_19275) acpT 3959828..3960415 (-) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=533135 K9O95_RS19245 WP_001136236.1 3955605..3956369(-) (amiE) [Escherichia coli strain SUISSEKPC3NDM5]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=533135 K9O95_RS19245 WP_001136236.1 3955605..3956369(-) (amiE) [Escherichia coli strain SUISSEKPC3NDM5]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAGCAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398