Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JOF24_RS08085 Genome accession   NZ_CP069214
Coordinates   1609167..1609946 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GUAL210     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604167..1614946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS08065 trmFO 1604854..1606161 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JOF24_RS08070 xerC 1606231..1607148 (+) 918 WP_039251511.1 tyrosine recombinase XerC -
  JOF24_RS08075 hslV 1607164..1607709 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JOF24_RS08080 hslU 1607717..1609129 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  JOF24_RS08085 codY 1609167..1609946 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JOF24_RS08090 flgB 1610300..1610689 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JOF24_RS08095 flgC 1610689..1611141 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  JOF24_RS08100 fliE 1611152..1611472 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JOF24_RS08105 fliF 1611515..1613125 (+) 1611 WP_061890600.1 flagellar basal-body MS-ring/collar protein FliF -
  JOF24_RS08110 fliG 1613138..1614154 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JOF24_RS08115 fliH 1614147..1614902 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=532963 JOF24_RS08085 WP_003154263.1 1609167..1609946(+) (codY) [Bacillus velezensis strain GUAL210]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=532963 JOF24_RS08085 WP_003154263.1 1609167..1609946(+) (codY) [Bacillus velezensis strain GUAL210]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471