Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LA346_RS02430 Genome accession   NZ_CP083627
Coordinates   453991..455262 (+) Length   423 a.a.
NCBI ID   WP_001113216.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448991..460262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS02395 (LA346_02395) - 450056..450484 (-) 429 WP_000418156.1 NUDIX hydrolase -
  LA346_RS02400 (LA346_02400) - 450465..451553 (-) 1089 WP_000719724.1 site-2 protease family protein -
  LA346_RS02405 (LA346_02405) - 451572..452042 (-) 471 WP_000257097.1 DUF3013 family protein -
  LA346_RS02410 (LA346_02410) - 452333..452785 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  LA346_RS02415 (LA346_02415) - 452822..453001 (-) 180 WP_001132283.1 type II toxin-antitoxin system HicA family toxin -
  LA346_RS02420 (LA346_02420) - 453138..453317 (-) 180 WP_001809903.1 hypothetical protein -
  LA346_RS02425 (LA346_02425) - 453482..453721 (-) 240 WP_000818079.1 hypothetical protein -
  LA346_RS02430 (LA346_02430) rarA 453991..455262 (+) 1272 WP_001113216.1 replication-associated recombination protein A Machinery gene
  LA346_RS02440 (LA346_02440) - 455806..457125 (-) 1320 WP_000502554.1 glycoside hydrolase family 32 protein -
  LA346_RS02445 (LA346_02445) - 457135..458751 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  LA346_RS02450 (LA346_02450) - 458780..459670 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47027.47 Da        Isoelectric Point: 5.9471

>NTDB_id=532883 LA346_RS02430 WP_001113216.1 453991..455262(+) (rarA) [Streptococcus pneumoniae strain FDAARGOS_1508]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=532883 LA346_RS02430 WP_001113216.1 453991..455262(+) (rarA) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTATCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572