Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JOS67_RS14210 Genome accession   NZ_CP069195
Coordinates   2986741..2987466 (+) Length   241 a.a.
NCBI ID   WP_065275014.1    Uniprot ID   A0AA92LR36
Organism   Vibrio diabolicus strain SLV18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2981741..2992466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS14195 (JOS67_14195) - 2982886..2985195 (+) 2310 WP_203346742.1 Tex family protein -
  JOS67_RS14200 (JOS67_14200) - 2985300..2985764 (-) 465 WP_005379316.1 hypothetical protein -
  JOS67_RS14205 (JOS67_14205) bioH 2985889..2986656 (-) 768 WP_021707605.1 pimeloyl-ACP methyl ester esterase BioH -
  JOS67_RS14210 (JOS67_14210) comF 2986741..2987466 (+) 726 WP_065275014.1 phosphoribosyltransferase family protein Machinery gene
  JOS67_RS14215 (JOS67_14215) nfuA 2987564..2988148 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  JOS67_RS14220 (JOS67_14220) nudE 2988325..2988894 (+) 570 WP_065275013.1 ADP compounds hydrolase NudE -
  JOS67_RS14225 (JOS67_14225) cysQ 2988939..2989766 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JOS67_RS14230 (JOS67_14230) - 2990070..2990831 (-) 762 WP_017635007.1 type II secretion system protein N -
  JOS67_RS14235 (JOS67_14235) - 2990833..2991324 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27747.02 Da        Isoelectric Point: 9.3977

>NTDB_id=532842 JOS67_RS14210 WP_065275014.1 2986741..2987466(+) (comF) [Vibrio diabolicus strain SLV18]
MLSHHWQNIMHRVLSSQCGLCRLPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLALRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=532842 JOS67_RS14210 WP_065275014.1 2986741..2987466(+) (comF) [Vibrio diabolicus strain SLV18]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGCGGCCTGTGTCGGCTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCAGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACTGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477