NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	LLNCDO700_RS11235	Genome accession	NZ_CP069179
Coordinates	2208339..2209277 (-)	Length	312 a.a.
NCBI ID	WP_011835969.1	Uniprot ID	A2RNG6
Organism	Lactococcus cremoris strain NCDO700
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2203339..2214277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO700_RS11210 (LLNCDO700_11175)	frr	2203517..2204074 (-)	558	WP_011835965.1	ribosome recycling factor	-
LLNCDO700_RS11215 (LLNCDO700_11180)	pyrH	2204231..2204947 (-)	717	WP_004254608.1	UMP kinase	-
LLNCDO700_RS11220 (LLNCDO700_11185)	-	2205032..2205484 (-)	453	WP_011835966.1	hypothetical protein	-
LLNCDO700_RS11225 (LLNCDO700_11190)	-	2205614..2206801 (-)	1188	WP_011835967.1	acetate kinase	-
LLNCDO700_RS11230 (LLNCDO700_11195)	-	2206960..2208147 (-)	1188	WP_011835968.1	acetate kinase	-
LLNCDO700_RS11235 (LLNCDO700_11200)	comYH	2208339..2209277 (-)	939	WP_011835969.1	class I SAM-dependent methyltransferase	Machinery gene
LLNCDO700_RS11240 (LLNCDO700_11205)	-	2209365..2209616 (-)	252	WP_011677086.1	DUF3165 family protein	-
LLNCDO700_RS11245 (LLNCDO700_11210)	typA	2209717..2211549 (-)	1833	WP_031286284.1	translational GTPase TypA	-
LLNCDO700_RS11250	-	2211726..2212198 (-)	473	Protein_2192	hypothetical protein	-
LLNCDO700_RS11255 (LLNCDO700_11215)	-	2212227..2212631 (-)	405	WP_011835970.1	hypothetical protein	-
LLNCDO700_RS11260 (LLNCDO700_11220)	-	2212643..2213101 (-)	459	WP_011835971.1	hypothetical protein	-
LLNCDO700_RS11265 (LLNCDO700_11225)	-	2213116..2213889 (-)	774	WP_011835972.1	hypothetical protein	-

Sequence

Protein

Download Length: 312 a.a. Molecular weight: 34722.74 Da Isoelectric Point: 4.3603

                                >NTDB_id=532750 LLNCDO700_RS11235 WP_011835969.1 2208339..2209277(-) (comYH) [Lactococcus cremoris strain NCDO700]

MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ

VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS

YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV

QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHVTFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide

Download Length: 939 bp

                                >NTDB_id=532750 LLNCDO700_RS11235 WP_011835969.1 2208339..2209277(-) (comYH) [Lactococcus cremoris strain NCDO700]

ATGAACATGGAGAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA

TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA

ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA

GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA

TAAAAATTCTGAACTTCGCTTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA

AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC

TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT

CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT

TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA

CAAGGTCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA

TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGTGACCTTTGCTCATCCTTTGTCATCGTTGA

CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAATTATAA

Domains

No domain identified.

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A2RNG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	49.201	100	0.494
comYH	Streptococcus mutans UA159	48.882	100	0.49

Detailed information NTG0532750