Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K9U07_RS12865 Genome accession   NZ_CP083512
Coordinates   2626426..2627190 (+) Length   254 a.a.
NCBI ID   WP_001136197.1    Uniprot ID   -
Organism   Escherichia coli strain elppa4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621426..2632190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U07_RS12845 (K9U07_12875) acpT 2622380..2622967 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  K9U07_RS12850 (K9U07_12880) nikA 2623078..2624652 (+) 1575 WP_000493125.1 nickel ABC transporter substrate-binding protein -
  K9U07_RS12855 (K9U07_12885) nikB 2624652..2625596 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  K9U07_RS12860 (K9U07_12890) nikC 2625593..2626426 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  K9U07_RS12865 (K9U07_12895) amiE 2626426..2627190 (+) 765 WP_001136197.1 nickel import ATP-binding protein NikD Regulator
  K9U07_RS12870 (K9U07_12900) nikE 2627187..2627993 (+) 807 WP_000173651.1 nickel import ATP-binding protein NikE -
  K9U07_RS12875 (K9U07_12905) nikR 2627999..2628400 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  K9U07_RS12880 (K9U07_12910) - 2628520..2628879 (-) 360 WP_000593557.1 type II toxin-antitoxin system HicB family antitoxin -
  K9U07_RS12885 (K9U07_12915) - 2628876..2629149 (-) 274 Protein_2528 type II toxin-antitoxin system HicA family toxin -
  K9U07_RS12890 (K9U07_12920) yhhJ 2629222..2630346 (-) 1125 WP_001469404.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26813.43 Da        Isoelectric Point: 6.6886

>NTDB_id=532666 K9U07_RS12865 WP_001136197.1 2626426..2627190(+) (amiE) [Escherichia coli strain elppa4]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=532666 K9U07_RS12865 WP_001136197.1 2626426..2627190(+) (amiE) [Escherichia coli strain elppa4]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCTGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402