Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K9U08_RS14975 Genome accession   NZ_CP083503
Coordinates   3005517..3006281 (+) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain elppa5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000517..3011281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U08_RS14955 (K9U08_14965) acpT 3001471..3002058 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  K9U08_RS14960 (K9U08_14970) nikA 3002169..3003743 (+) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  K9U08_RS14965 (K9U08_14975) nikB 3003743..3004687 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  K9U08_RS14970 (K9U08_14980) nikC 3004684..3005517 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  K9U08_RS14975 (K9U08_14985) amiE 3005517..3006281 (+) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  K9U08_RS14980 (K9U08_14990) nikE 3006278..3007084 (+) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  K9U08_RS14985 (K9U08_14995) nikR 3007089..3007490 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=532587 K9U08_RS14975 WP_001136198.1 3005517..3006281(+) (amiE) [Escherichia coli strain elppa5]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=532587 K9U08_RS14975 WP_001136198.1 3005517..3006281(+) (amiE) [Escherichia coli strain elppa5]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402