Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   B739_RS05390 Genome accession   NC_018609
Coordinates   1174642..1176411 (+) Length   589 a.a.
NCBI ID   WP_236627899.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-CH-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169642..1181411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B739_RS05370 - 1170217..1171095 (+) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -
  B739_RS05375 (B739_1092) - 1171198..1172391 (+) 1194 WP_014938043.1 endonuclease/exonuclease/phosphatase family protein -
  B739_RS05380 (B739_1093) - 1172498..1174126 (+) 1629 WP_014938044.1 acyl-CoA carboxylase subunit beta -
  B739_RS05385 (B739_1094) - 1174248..1174553 (+) 306 WP_014938045.1 hypothetical protein -
  B739_RS05390 (B739_1095) comEC 1174642..1176411 (+) 1770 WP_236627899.1 ComEC/Rec2 family competence protein Machinery gene
  B739_RS05395 (B739_1096) - 1176536..1177204 (+) 669 WP_014938047.1 succinate dehydrogenase cytochrome b subunit -
  B739_RS05400 (B739_1097) - 1177267..1179279 (+) 2013 WP_014938048.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  B739_RS05405 (B739_1098) - 1179303..1180073 (+) 771 WP_014938049.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  B739_RS05410 (B739_1099) dinB 1180159..1181241 (+) 1083 WP_014938050.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68891.34 Da        Isoelectric Point: 9.8942

>NTDB_id=53248 B739_RS05390 WP_236627899.1 1174642..1176411(+) (comEC) [Riemerella anatipestifer RA-CH-1]
MKKQILFSLFISFSLGVFLQDLSELSWQQSNITTTLGAISLGLIWVKADWLVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFYQNQPLKAVLSVPKDLEELDYMHYYQSQLSLYPLEPSKNNYQFDYAKYQ
ARKGVYYRAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLIVPAKFRTGVILFSLVLIWIFTWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKTQKLLLYTFTVSTAAQLGTMPIVIYYFHQYSAWSI
LANLLVLPLMEIVIIISFLMTIIFGLGIYWSWLSFTYDWLIKALLWLIGFFGKIEMGYFQDIPLSIWEMGVWAVGLYFLR
EILIRFTWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHYHYHTKVFSVLDKGKVYFWVSDKDNLEMLESYLIKPYVI
SKRAESYKVKMMSKEVDEVIFNGKRYLFQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=53248 B739_RS05390 WP_236627899.1 1174642..1176411(+) (comEC) [Riemerella anatipestifer RA-CH-1]
GTGAAAAAGCAAATTCTTTTTAGCCTTTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAGTGAACTTTCGTG
GCAACAGTCTAATATTACAACCACATTAGGAGCTATTAGTCTTGGATTGATTTGGGTGAAAGCAGATTGGTTAGTTCGAA
TTAGAATTTGGTTACTTAATATCTTTTTTCTCTGCTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAACAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTTATCAAAATCAACCTTTAAAAGCAGTTTTATCTGTTCCAAAGGATTTGGAGGAGTTAGATTATATGC
ACTACTATCAATCTCAACTTAGTTTATATCCGTTAGAGCCTTCCAAGAATAATTACCAATTTGATTATGCCAAATATCAA
GCGAGGAAAGGTGTTTATTATAGAGCTTATGCTAAGGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGCAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGTATTGTTTTGGCTGATAGAACGGAGGTAGATGCGGAAACAAATACCAATTTTAGGAGAAGTGGTTTAACACATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTGATCTATATGCTACTGAGTTTGATTGTGCCAGCAAAATT
TAGGACAGGCGTAATATTGTTTAGCTTGGTGTTAATTTGGATTTTTACTTGGTTTATTGGTTGGGGAAGTTCTGTTGTTA
GGTCTTGTATCATGCTCACCGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAACTCAAAAACTATTACTTTATACTT
TTACTGTGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTTTAGTTCTTCCTTTAATGGAAATTGTGATTATAATATCGTTTTTAATGACGATTATTTTTGGTTTAGG
GATTTATTGGAGTTGGCTATCTTTTACTTATGATTGGTTAATTAAAGCGTTGCTATGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATGGGGTATTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTGTTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GTTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGATGGCATTATCATTATCACACTAAAGTGTTCTCTGTTTTGGATA
AAGGGAAAGTGTATTTTTGGGTGTCAGATAAAGATAATTTAGAGATGTTAGAAAGTTATCTCATAAAACCTTATGTAATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAATGATGTCTAAAGAAGTAGATGAGGTTATTTTTAATGGAAAAAGGTATTT
GTTTCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-479)

Domain of unknown function (DUF4131) (DUF4131)

(35-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

90.323

100

0.903

Multiple sequence alignment