Detailed information NTG0532395

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: MHHHKEFG_RS11905
• Genome accession: NZ_CP069125
• Coordinates: 2340552..2342936 (-)
• Length: 794 a.a.
• NCBI ID: WP_066030604.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain D5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2335552..2347936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MHHHKEFG_RS11870 (MHHHKEFG_02423)	-	2336615..2337343 (+)	729	WP_034661507.1	amino acid ABC transporter ATP-binding protein	-
MHHHKEFG_RS11875 (MHHHKEFG_02424)	-	2337357..2338166 (+)	810	WP_066030605.1	transporter substrate-binding domain-containing protein	-
MHHHKEFG_RS11880 (MHHHKEFG_02425)	-	2338247..2338900 (+)	654	WP_060596859.1	amino acid ABC transporter permease	-
MHHHKEFG_RS11885 (MHHHKEFG_02426)	-	2338916..2339566 (+)	651	WP_060596860.1	amino acid ABC transporter permease	-
MHHHKEFG_RS11890	-	2339602..2339733 (-)	132	WP_003216198.1	YrzQ family protein	-
MHHHKEFG_RS11895 (MHHHKEFG_02428)	-	2339754..2339945 (-)	192	WP_003216308.1	hypothetical protein	-
MHHHKEFG_RS11900 (MHHHKEFG_02429)	-	2339959..2340417 (-)	459	WP_034662034.1	PRC-barrel domain-containing protein	-
MHHHKEFG_RS11905 (MHHHKEFG_02430)	recD2	2340552..2342936 (-)	2385	WP_066030604.1	ATP-dependent RecD-like DNA helicase	Machinery gene
MHHHKEFG_RS11910 (MHHHKEFG_02431)	-	2342956..2343609 (-)	654	WP_034661516.1	tetratricopeptide repeat protein	-
MHHHKEFG_RS11915 (MHHHKEFG_02432)	mnmA	2343670..2344788 (-)	1119	WP_034661519.1	tRNA 2-thiouridine(34) synthase MnmA	-
MHHHKEFG_RS11920 (MHHHKEFG_02433)	-	2344884..2346026 (-)	1143	WP_060596863.1	cysteine desulfurase family protein	-
MHHHKEFG_RS11925 (MHHHKEFG_02434)	cymR	2346045..2346464 (-)	420	WP_012010726.1	cysteine metabolism transcriptional regulator CymR	-
MHHHKEFG_RS11930 (MHHHKEFG_02435)	-	2346671..2347936 (+)	1266	WP_066030603.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89109.60 Da
• Isoelectric Point: 5.2082

>NTDB_id=532395 MHHHKEFG_RS11905 WP_066030604.1 2340552..2342936(-) (recD2) [Bacillus pumilus strain D5]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHIWNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLMQTDEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=532395 MHHHKEFG_RS11905 WP_066030604.1 2340552..2342936(-) (recD2) [Bacillus pumilus strain D5]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGTAAAGTCACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTACCGACAACGAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGATGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCTGCAGCGCTCCAGGAACATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTCAGCATGAAGATATACCAAGTGTACGAGAG
TGAAACGCTGCAAAAGATTGAGGAAAACCCGTATCAGCTCGTCAAGGATGTCGAAGGGATCGGATTTATTAAGGCGGATG
AGCTTGGCGCTAGAACCGGCATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCCTGCTTTATACAGTCGAAACAGCA
AGTCTTCAGGACGGTCATACGTACATACAAACGAAAGATTTGATCGTTGAAACCCGCAAGCTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGATGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGAATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTCCCTGAATCAGAATTCCTGCTCGCACTTGGGGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CGGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTAAC
CATTCACCGTTTGCTCGGCTGGAACGGATCAGAGGGCTTTTCGCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCACTTGTTTAAAGCGATTCCTGATCATATCCAAGTGATC
ATGGTAGGAGATGAACATCAGCTTCCATCTGTCGGACCAGGCCAAGTGTTAAGGGATTTACTTGCCTCACAAGCCGTACC
AGCTGTTACACTGACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAAGATATTACCGCACGTTCAAAGGATCGATCTTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGACATTCAAGTGCTTGCGCCAATGTATAAAGGGAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTGGAATCCAAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAAAATAATATTTTTAACGGTGATATC
GGCGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCAATCGTTGTGCTGCCAGTCGTGAGAAGCTACTACAGAATGCTGCGGCGAAATCTGCTGTACACAGCTATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGTGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTGATGCAAACTGATGAAGTTATGGATGCGGAGCTTGCAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.874	100	0.8