Detailed information NTG0532383

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: MHHHKEFG_RS07670
• Genome accession: NZ_CP069125
• Coordinates: 1539533..1540312 (+)
• Length: 259 a.a.
• NCBI ID: WP_012009951.1
• Uniprot ID: A8FD81
• Organism: Bacillus pumilus strain D5
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1534533..1545312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MHHHKEFG_RS07650 (MHHHKEFG_01569)	trmFO	1535237..1536541 (+)	1305	WP_034662383.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
MHHHKEFG_RS07655 (MHHHKEFG_01570)	xerC	1536604..1537521 (+)	918	WP_060596252.1	tyrosine recombinase XerC	-
MHHHKEFG_RS07660 (MHHHKEFG_01571)	hslV	1537536..1538081 (+)	546	WP_003211247.1	ATP-dependent protease subunit HslV	-
MHHHKEFG_RS07665 (MHHHKEFG_01572)	hslU	1538098..1539498 (+)	1401	WP_066030914.1	HslU--HslV peptidase ATPase subunit	-
MHHHKEFG_RS07670 (MHHHKEFG_01573)	codY	1539533..1540312 (+)	780	WP_012009951.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
MHHHKEFG_RS07675 (MHHHKEFG_01574)	flgB	1540600..1540989 (+)	390	WP_012009952.1	flagellar basal body rod protein FlgB	-
MHHHKEFG_RS07680 (MHHHKEFG_01575)	flgC	1540989..1541441 (+)	453	WP_012009953.1	flagellar basal body rod protein FlgC	-
MHHHKEFG_RS07685 (MHHHKEFG_01576)	fliE	1541453..1541770 (+)	318	WP_007499609.1	flagellar hook-basal body complex protein FliE	-
MHHHKEFG_RS07690 (MHHHKEFG_01577)	fliF	1541820..1543412 (+)	1593	WP_066030913.1	flagellar basal-body MS-ring/collar protein FliF	-
MHHHKEFG_RS07695 (MHHHKEFG_01578)	fliG	1543424..1544440 (+)	1017	WP_008344808.1	flagellar motor switch protein FliG	-
MHHHKEFG_RS07700 (MHHHKEFG_01579)	fliH	1544433..1545197 (+)	765	WP_066030912.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29044.31 Da
• Isoelectric Point: 4.6614

>NTDB_id=532383 MHHHKEFG_RS07670 WP_012009951.1 1539533..1540312(+) (codY) [Bacillus pumilus strain D5]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=532383 MHHHKEFG_RS07670 WP_012009951.1 1539533..1540312(+) (codY) [Bacillus pumilus strain D5]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: A8FD81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	95.753	100	0.958
codY	Lactococcus lactis subsp. lactis strain DGCC12653	48.031	98.069	0.471