Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JNE42_RS08305 Genome accession   NZ_CP069098
Coordinates   1618529..1619308 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain 63-2-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613529..1624308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS08285 (JNE42_08285) trmFO 1614233..1615537 (+) 1305 WP_159159620.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JNE42_RS08290 (JNE42_08290) xerC 1615600..1616517 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  JNE42_RS08295 (JNE42_08295) hslV 1616532..1617077 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  JNE42_RS08300 (JNE42_08300) hslU 1617094..1618494 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  JNE42_RS08305 (JNE42_08305) codY 1618529..1619308 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JNE42_RS08310 (JNE42_08310) flgB 1619599..1619988 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  JNE42_RS08315 (JNE42_08315) flgC 1619988..1620440 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  JNE42_RS08320 (JNE42_08320) fliE 1620452..1620769 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  JNE42_RS08325 (JNE42_08325) fliF 1620820..1622412 (+) 1593 WP_203144324.1 flagellar basal-body MS-ring/collar protein FliF -
  JNE42_RS08330 (JNE42_08330) fliG 1622424..1623440 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  JNE42_RS08335 (JNE42_08335) fliH 1623433..1624197 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=532323 JNE42_RS08305 WP_007499612.1 1618529..1619308(+) (codY) [Bacillus altitudinis strain 63-2-2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=532323 JNE42_RS08305 WP_007499612.1 1618529..1619308(+) (codY) [Bacillus altitudinis strain 63-2-2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAATAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471