Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JN168_RS06230 Genome accession   NZ_CP069082
Coordinates   1331667..1334057 (+) Length   796 a.a.
NCBI ID   WP_042738520.1    Uniprot ID   -
Organism   Staphylococcus gallinarum strain STP534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326667..1339057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS06210 sal(D) 1326910..1328544 (+) 1635 WP_279526239.1 ABC-F type ribosomal protection protein Sal(D) -
  JN168_RS06215 - 1328605..1329747 (+) 1143 WP_107511914.1 cysteine desulfurase family protein -
  JN168_RS06220 mnmA 1329748..1330860 (+) 1113 WP_042738518.1 tRNA 2-thiouridine(34) synthase MnmA -
  JN168_RS06225 - 1330999..1331664 (+) 666 WP_042738519.1 tetratricopeptide repeat protein -
  JN168_RS06230 recD2 1331667..1334057 (+) 2391 WP_042738520.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JN168_RS06235 alaS 1334419..1337049 (+) 2631 WP_279526240.1 alanine--tRNA ligase -
  JN168_RS06240 - 1337122..1337382 (+) 261 WP_107527555.1 IreB family regulatory phosphoprotein -
  JN168_RS06245 ruvX 1337386..1337814 (+) 429 WP_042738523.1 Holliday junction resolvase RuvX -
  JN168_RS06250 - 1337832..1338161 (+) 330 WP_042738524.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 89794.27 Da        Isoelectric Point: 4.5047

>NTDB_id=532242 JN168_RS06230 WP_042738520.1 1331667..1334057(+) (recD2) [Staphylococcus gallinarum strain STP534]
MEDPTLFNQSMIKGTVDAILFQNKENFYTVLKVDTIETNENFDSMPTIVGFFPDIAEGDVYTFKGQIVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNDPTILENVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMSIYQAYLGETLTIVEQKPYQLVYDVKGIGFNKADTLARNVGIQFNDPERLKAGVLYVLEEECIKQG
HTYLPTQTVLDMTSDMLSNQPQEIINHEQLEEVMQQLVDADKLIRQDTEVAIPSLYYSELKSVQNLYRNFTYTNKLKEIE
QSDLLLEIGEIETRNDVNYAESQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKNDDYPVVLG
APTGRASKRLADATGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFMNAVPIDAQIVLVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHRMKLNEPIDISQRYHDRNFINCSTEQIPTVVEKVVGSAV
KKGYDMSDIQVLAPMYKGSAGIKKLNTVLQSILNPKQKDSREIEFGDVIFRKGDKVLQLVNRPSDNIFNGDIGVVVGIFW
AKENALNKDVLVVDFEGNEITFSRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLNTHGQVRLTQLCSFLKDYFNNEEADTEAQQINEYVDADTILTETTMFKIDPMINMGQISPYDFIED

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=532242 JN168_RS06230 WP_042738520.1 1331667..1334057(+) (recD2) [Staphylococcus gallinarum strain STP534]
ATGGAGGACCCTACATTATTTAATCAATCAATGATTAAAGGCACAGTAGATGCTATACTTTTTCAAAATAAAGAAAATTT
CTACACCGTCTTAAAGGTCGATACGATTGAAACAAATGAAAATTTTGATTCGATGCCTACAATTGTAGGGTTCTTTCCAG
ATATTGCTGAAGGAGACGTATATACCTTTAAAGGTCAAATAGTGACGCACGCAAAGTATGGTAAGCAATTAAAAGCAGAA
ACATTTGAAAAGGAATTACCACAAACGAAAGAAGCGATAATTAGTTACTTGTCGAGTGATTTATTTAAAGGTATCGGAAA
AAAAACAGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCAATCAATGATATATTGAATGATCCAACCATTCTAGAAA
ATGTGCCTGGTTTACCAAAAAAGAAACAAAAGCAAATAGCTGAACAAATTGCGAGTAATCAGGAAACAGAGCAAATCATT
ATCAGGCTACATGATTTAGGCTTTGGTCCCAAATTAGCGATGTCTATTTATCAAGCTTATCTTGGTGAAACATTGACGAT
AGTTGAACAAAAACCTTATCAACTCGTTTACGATGTTAAAGGAATAGGTTTTAATAAGGCGGATACTTTAGCAAGAAACG
TTGGAATACAATTCAATGATCCTGAACGATTGAAAGCTGGTGTGCTTTATGTTCTAGAGGAAGAATGTATCAAACAAGGA
CATACATACTTGCCAACACAAACTGTGTTAGATATGACCAGTGACATGTTGTCGAATCAACCACAAGAAATAATTAACCA
CGAACAATTAGAAGAAGTCATGCAACAACTTGTAGATGCAGATAAGTTAATACGTCAAGACACTGAAGTTGCAATACCAA
GTTTGTATTATTCTGAATTAAAAAGTGTCCAAAACTTGTATCGTAATTTTACTTATACTAACAAATTAAAGGAAATTGAA
CAGTCAGATCTATTGTTAGAGATAGGTGAAATTGAAACGAGAAATGATGTTAATTATGCTGAGTCACAACGAGAAGCGTT
ACAAACTGCAATTAATTCTAAGGTAATGCTGTTAACAGGTGGTCCAGGTACAGGTAAGACTACAGTAATTAAAGGTATTG
TAGAATTATATGCTGAAATACATGGGTTATCTCTAGATTATGACGACTATAAAAATGATGATTATCCAGTTGTATTAGGT
GCGCCAACTGGAAGGGCATCGAAACGTCTAGCAGATGCAACAGGACTTGAAGCTATGACGATTCATCGTTTGATAGGTTG
GAATCAAGATACCCAACCTGAAGATATCTTGGATAACGAGATATCAGCCAAATTAATCATTATAGATGAAATGTCAATGG
TTGATACGTGGCTATTTCACCAATTTATGAATGCTGTACCAATAGATGCACAAATTGTACTCGTAGGCGATGAAGACCAA
TTGCCATCAGTAGGACCAGGACAAGTATTTAAGGATTTAATTGACTCAAAAGTGGTGCCACGTGTGAATTTAACTGAAGT
TTATCGCCAGCAAGATGGTTCAAGTATCATTGAATTAGCACATCGTATGAAATTAAACGAACCTATTGATATAAGCCAAC
GTTATCACGATCGTAACTTTATTAATTGTAGTACTGAACAAATTCCCACTGTAGTCGAAAAGGTTGTGGGCAGTGCAGTG
AAGAAAGGCTATGACATGAGTGATATTCAAGTATTAGCGCCTATGTATAAAGGGTCAGCCGGTATTAAAAAGCTCAATAC
AGTGTTGCAATCTATACTTAATCCTAAACAAAAAGATTCTAGAGAAATAGAATTTGGTGATGTGATATTTCGTAAAGGAG
ATAAAGTATTGCAACTTGTGAATAGACCTAGCGATAATATTTTTAATGGTGATATTGGTGTTGTTGTAGGTATATTTTGG
GCAAAGGAAAATGCCTTGAATAAAGACGTCTTAGTCGTTGATTTTGAAGGAAATGAAATTACATTTTCAAGACAAGATTT
AATGGAGTTAACACATGCTTATTGTACTTCTATTCATAAGTCACAAGGGTCTGAATTTCCAATCGTCATTATGCCTATGG
TCAAACAATACTTTAGAATGTTACAAAAGCCTATATTATATACTGGATTAACAAGAGCTAAACAGTCTCTTGTATTTTTA
GGAGATCCACAAGCCTTTGAAATAGGATTGAACACACATGGACAAGTGCGTTTGACTCAACTTTGTTCATTTTTAAAGGA
TTATTTCAATAATGAAGAAGCGGATACAGAAGCACAACAAATAAATGAATATGTAGATGCCGATACGATTTTAACTGAAA
CAACAATGTTTAAAATTGACCCAATGATTAATATGGGCCAAATTTCGCCTTATGATTTTATAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.378

99.749

0.503