Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JNO42_RS20930 Genome accession   NZ_CP069080
Coordinates   4537807..4539297 (+) Length   496 a.a.
NCBI ID   WP_239606917.1    Uniprot ID   -
Organism   Pseudomonas putida strain LWPZF     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4532807..4544297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO42_RS20915 (JNO42_20790) - 4533282..4533640 (+) 359 Protein_4131 magnesium chelatase domain-containing protein -
  JNO42_RS20920 (JNO42_20795) drt3a 4533758..4535032 (+) 1275 WP_345773160.1 antiviral reverse transcriptase Drt3a -
  JNO42_RS20925 (JNO42_20800) drt3b 4535029..4536999 (+) 1971 WP_143494081.1 antiviral reverse transcriptase Drt3b -
  JNO42_RS20930 (JNO42_20805) comM 4537807..4539297 (+) 1491 WP_239606917.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JNO42_RS20935 (JNO42_20810) - 4539366..4539734 (-) 369 WP_185968725.1 response regulator -
  JNO42_RS20940 (JNO42_20815) - 4539731..4540723 (-) 993 WP_003253577.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53031.99 Da        Isoelectric Point: 7.7100

>NTDB_id=532217 JNO42_RS20930 WP_239606917.1 4537807..4539297(+) (comM) [Pseudomonas putida strain LWPZF]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALLGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=532217 JNO42_RS20930 WP_239606917.1 4537807..4539297(+) (comM) [Pseudomonas putida strain LWPZF]
ATGTCTCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCAGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCACCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGAAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCGGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCGTCCGGCCCGGCGCTGCTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGATGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.847

100

0.558
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Vibrio cholerae strain A1552

55.354

99.798

0.552
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.41

100

0.48