Detailed information NTG0532179

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: JOA01_RS07020
• Genome accession: NZ_CP069079
• Coordinates: 1374705..1375640 (-)
• Length: 311 a.a.
• NCBI ID: WP_217374085.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain BS26
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1369705..1380640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JOA01_RS06990 (JOA01_06995)	-	1369979..1371619 (-)	1641	WP_217374082.1	polysaccharide biosynthesis protein	-
JOA01_RS06995 (JOA01_07000)	yghU	1371779..1372567 (-)	789	WP_130555256.1	glutathione-dependent disulfide-bond oxidoreductase	-
JOA01_RS07000 (JOA01_07005)	-	1372576..1372866 (-)	291	WP_217374083.1	hypothetical protein	-
JOA01_RS07005 (JOA01_07010)	rplA	1372972..1373661 (-)	690	WP_217374084.1	50S ribosomal protein L1	-
JOA01_RS07010 (JOA01_07015)	rplK	1373702..1374127 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
JOA01_RS07015 (JOA01_07020)	-	1374282..1374650 (+)	369	WP_239604110.1	DUF3397 domain-containing protein	-
JOA01_RS07020 (JOA01_07025)	amiF	1374705..1375640 (-)	936	WP_217374085.1	ABC transporter ATP-binding protein	Regulator
JOA01_RS07025 (JOA01_07030)	oppD	1375637..1376680 (-)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
JOA01_RS07030 (JOA01_07035)	-	1376695..1377726 (-)	1032	WP_217374086.1	ABC transporter permease	-
JOA01_RS07035 (JOA01_07040)	-	1377737..1378651 (-)	915	WP_217374087.1	ABC transporter permease	-
JOA01_RS07040 (JOA01_07045)	-	1378722..1380368 (-)	1647	WP_217374088.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34997.77 Da
• Isoelectric Point: 6.0122

>NTDB_id=532179 JOA01_RS07020 WP_217374085.1 1374705..1375640(-) (amiF) [Streptococcus parasuis strain BS26]
MSESRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGIMHWGKMLEIGTSDA
VYNDPIHPYTKSLLSAIPEPDPEFEKGRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=532179 JOA01_RS07020 WP_217374085.1 1374705..1375640(-) (amiF) [Streptococcus parasuis strain BS26]
ATGAGCGAAAGTAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CAGTTGGCCGTACCATTCTAAAGTTGTATGACTATAATGCTGGCGATATTCTCTTTGATGGCCAGTCAATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGCTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTTTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTTTC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTATTATGCACTGGGGTAAAATGTTGGAAATTGGGACGTCGGATGCT
GTTTACAATGATCCAATTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGG
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACACCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.597	99.035	0.521
amiF	Streptococcus thermophilus LMG 18311	52.273	99.035	0.518
amiF	Streptococcus salivarius strain HSISS4	51.948	99.035	0.514