Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JOA01_RS05710 Genome accession   NZ_CP069079
Coordinates   1121117..1121956 (-) Length   279 a.a.
NCBI ID   WP_217373882.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1116117..1126956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS05695 (JOA01_05700) pheT 1116255..1118654 (-) 2400 WP_217373881.1 phenylalanine--tRNA ligase subunit beta -
  JOA01_RS05700 (JOA01_05705) - 1118656..1119177 (-) 522 WP_217375167.1 N-acetyltransferase -
  JOA01_RS05705 (JOA01_05710) pheS 1119822..1120865 (-) 1044 WP_174845671.1 phenylalanine--tRNA ligase subunit alpha -
  JOA01_RS05710 (JOA01_05715) endA 1121117..1121956 (-) 840 WP_217373882.1 DNA/RNA non-specific endonuclease Machinery gene
  JOA01_RS05715 (JOA01_05720) - 1121986..1122177 (-) 192 WP_130554299.1 DNA-directed RNA polymerase subunit beta -
  JOA01_RS05720 (JOA01_05725) murA 1122170..1123453 (-) 1284 WP_217373883.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JOA01_RS05725 (JOA01_05730) - 1123476..1123703 (-) 228 WP_130554297.1 DUF1146 family protein -
  JOA01_RS05730 (JOA01_05735) - 1123887..1124993 (-) 1107 WP_217373884.1 ABC transporter ATP-binding protein -
  JOA01_RS05735 (JOA01_05740) - 1124994..1125731 (-) 738 WP_217373885.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30160.43 Da        Isoelectric Point: 6.4997

>NTDB_id=532174 JOA01_RS05710 WP_217373882.1 1121117..1121956(-) (endA) [Streptococcus parasuis strain BS26]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVYE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=532174 JOA01_RS05710 WP_217373882.1 1121117..1121956(-) (endA) [Streptococcus parasuis strain BS26]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTGCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACAGGTAATGGACGTACGTCATGGACTCCTGCAGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAATCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGTATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.403

90.681

0.602
  endA Streptococcus pneumoniae D39

66.403

90.681

0.602
  endA Streptococcus pneumoniae R6

66.403

90.681

0.602
  endA Streptococcus pneumoniae TIGR4

66.403

90.681

0.602