Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | JNE45_RS07885 | Genome accession | NZ_CP069061 |
| Coordinates | 1565041..1565820 (+) | Length | 259 a.a. |
| NCBI ID | WP_007499612.1 | Uniprot ID | A0A9X0FX88 |
| Organism | Bacillus safensis strain F6 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1545467..1589980 | 1565041..1565820 | within | 0 |
Gene organization within MGE regions
Location: 1545467..1589980
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JNE45_RS07780 (JNE45_07780) | ftsY | 1545682..1546668 (+) | 987 | WP_203129805.1 | signal recognition particle-docking protein FtsY | - |
| JNE45_RS07785 (JNE45_07785) | - | 1546812..1547144 (+) | 333 | WP_012009935.1 | putative DNA-binding protein | - |
| JNE45_RS07790 (JNE45_07790) | ffh | 1547158..1548498 (+) | 1341 | WP_041117374.1 | signal recognition particle protein | - |
| JNE45_RS07795 (JNE45_07795) | rpsP | 1548604..1548876 (+) | 273 | WP_008344841.1 | 30S ribosomal protein S16 | - |
| JNE45_RS07800 (JNE45_07800) | - | 1548876..1549121 (+) | 246 | WP_024424192.1 | KH domain-containing protein | - |
| JNE45_RS07805 (JNE45_07805) | - | 1549225..1549611 (+) | 387 | WP_024424191.1 | YlqD family protein | - |
| JNE45_RS07810 (JNE45_07810) | rimM | 1549620..1550144 (+) | 525 | WP_095408468.1 | ribosome maturation factor RimM | - |
| JNE45_RS07815 (JNE45_07815) | trmD | 1550141..1550875 (+) | 735 | WP_048239686.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JNE45_RS07820 (JNE45_07820) | rplS | 1551013..1551360 (+) | 348 | WP_008344834.1 | 50S ribosomal protein L19 | - |
| JNE45_RS07825 (JNE45_07825) | ylqF | 1551451..1552299 (+) | 849 | WP_046310915.1 | ribosome biogenesis GTPase YlqF | - |
| JNE45_RS07830 (JNE45_07830) | - | 1552376..1553140 (+) | 765 | WP_144485179.1 | ribonuclease HII | - |
| JNE45_RS07835 (JNE45_07835) | - | 1553167..1554906 (+) | 1740 | WP_144485181.1 | glycosyltransferase | - |
| JNE45_RS07840 (JNE45_07840) | - | 1554903..1555178 (+) | 276 | WP_047202155.1 | FlhB-like flagellar biosynthesis protein | - |
| JNE45_RS07845 (JNE45_07845) | sucC | 1555355..1556515 (+) | 1161 | WP_024426972.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JNE45_RS07850 (JNE45_07850) | sucD | 1556538..1557440 (+) | 903 | WP_007499624.1 | succinate--CoA ligase subunit alpha | - |
| JNE45_RS07855 (JNE45_07855) | dprA | 1557504..1558406 (+) | 903 | WP_095408472.1 | DNA-processing protein DprA | Machinery gene |
| JNE45_RS07860 (JNE45_07860) | topA | 1558599..1560674 (+) | 2076 | WP_111290908.1 | type I DNA topoisomerase | - |
| JNE45_RS07865 (JNE45_07865) | trmFO | 1560745..1562049 (+) | 1305 | WP_034317774.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| JNE45_RS07870 (JNE45_07870) | xerC | 1562112..1563029 (+) | 918 | WP_041108978.1 | tyrosine recombinase XerC | - |
| JNE45_RS07875 (JNE45_07875) | hslV | 1563044..1563589 (+) | 546 | WP_095408474.1 | ATP-dependent protease subunit HslV | - |
| JNE45_RS07880 (JNE45_07880) | hslU | 1563606..1565006 (+) | 1401 | WP_024424180.1 | HslU--HslV peptidase ATPase subunit | - |
| JNE45_RS07885 (JNE45_07885) | codY | 1565041..1565820 (+) | 780 | WP_007499612.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| JNE45_RS07890 (JNE45_07890) | flgB | 1566109..1566498 (+) | 390 | WP_039178512.1 | flagellar basal body rod protein FlgB | - |
| JNE45_RS07895 (JNE45_07895) | flgC | 1566498..1566950 (+) | 453 | WP_024424179.1 | flagellar basal body rod protein FlgC | - |
| JNE45_RS07900 (JNE45_07900) | fliE | 1566962..1567279 (+) | 318 | WP_007499609.1 | flagellar hook-basal body complex protein FliE | - |
| JNE45_RS07905 (JNE45_07905) | fliF | 1567329..1568921 (+) | 1593 | WP_095408476.1 | flagellar basal-body MS-ring/collar protein FliF | - |
| JNE45_RS07910 (JNE45_07910) | fliG | 1568933..1569949 (+) | 1017 | WP_034281776.1 | flagellar motor switch protein FliG | - |
| JNE45_RS07915 (JNE45_07915) | fliH | 1569942..1570706 (+) | 765 | WP_203129806.1 | flagellar assembly protein FliH | - |
| JNE45_RS07920 (JNE45_07920) | fliI | 1570703..1572019 (+) | 1317 | WP_048239706.1 | flagellar protein export ATPase FliI | - |
| JNE45_RS07925 (JNE45_07925) | fliJ | 1572028..1572471 (+) | 444 | WP_024424173.1 | flagellar export protein FliJ | - |
| JNE45_RS07930 (JNE45_07930) | - | 1572484..1573185 (+) | 702 | WP_144485190.1 | MotE family protein | - |
| JNE45_RS07935 (JNE45_07935) | - | 1573186..1574514 (+) | 1329 | WP_203129807.1 | flagellar hook-length control protein FliK | - |
| JNE45_RS07940 (JNE45_07940) | flgD | 1574514..1574960 (+) | 447 | WP_024426978.1 | flagellar hook assembly protein FlgD | - |
| JNE45_RS07945 (JNE45_07945) | flgG | 1574978..1575772 (+) | 795 | WP_095408480.1 | flagellar basal body rod protein FlgG | - |
| JNE45_RS07950 (JNE45_07950) | - | 1575810..1576025 (+) | 216 | WP_095408687.1 | flagellar FlbD family protein | - |
| JNE45_RS07955 (JNE45_07955) | fliL | 1576022..1576450 (+) | 429 | WP_095408481.1 | flagellar basal body-associated protein FliL | - |
| JNE45_RS07960 (JNE45_07960) | fliM | 1576483..1577481 (+) | 999 | WP_024424167.1 | flagellar motor switch protein FliM | - |
| JNE45_RS07965 (JNE45_07965) | fliY | 1577471..1578595 (+) | 1125 | WP_203129808.1 | flagellar motor switch phosphatase FliY | - |
| JNE45_RS07970 (JNE45_07970) | - | 1578623..1578985 (+) | 363 | WP_003212360.1 | response regulator | - |
| JNE45_RS07975 (JNE45_07975) | fliZ | 1579004..1579663 (+) | 660 | WP_095408483.1 | flagella biosynthesis regulatory protein FliZ | - |
| JNE45_RS07980 (JNE45_07980) | fliP | 1579656..1580321 (+) | 666 | WP_024424164.1 | flagellar type III secretion system pore protein FliP | - |
| JNE45_RS07985 (JNE45_07985) | fliQ | 1580338..1580607 (+) | 270 | WP_003211206.1 | flagellar biosynthesis protein FliQ | - |
| JNE45_RS07990 (JNE45_07990) | fliR | 1580614..1581393 (+) | 780 | WP_024426982.1 | flagellar biosynthetic protein FliR | - |
| JNE45_RS07995 (JNE45_07995) | flhB | 1581390..1582478 (+) | 1089 | WP_144485191.1 | flagellar biosynthesis protein FlhB | - |
| JNE45_RS08000 (JNE45_08000) | flhA | 1582508..1584541 (+) | 2034 | WP_203129809.1 | flagellar biosynthesis protein FlhA | - |
| JNE45_RS08005 (JNE45_08005) | flhF | 1584541..1585662 (+) | 1122 | WP_203129810.1 | flagellar biosynthesis protein FlhF | - |
| JNE45_RS08010 (JNE45_08010) | - | 1585656..1586561 (+) | 906 | WP_203129968.1 | MinD/ParA family protein | - |
| JNE45_RS08015 (JNE45_08015) | - | 1586558..1587631 (+) | 1074 | WP_142944796.1 | protein-glutamate methylesterase/protein-glutamine glutaminase | - |
| JNE45_RS08020 (JNE45_08020) | - | 1587637..1589661 (+) | 2025 | WP_095408488.1 | chemotaxis protein CheA | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28976.19 Da Isoelectric Point: 4.6467
>NTDB_id=532045 JNE45_RS07885 WP_007499612.1 1565041..1565820(+) (codY) [Bacillus safensis strain F6]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=532045 JNE45_RS07885 WP_007499612.1 1565041..1565820(+) (codY) [Bacillus safensis strain F6]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
96.525 |
100 |
0.965 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.031 |
98.069 |
0.471 |