Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DI291_RS14875 Genome accession   NZ_CP068988
Coordinates   2956147..2958495 (-) Length   782 a.a.
NCBI ID   WP_128822699.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2951147..2963495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS14855 (DI291_15110) - 2951191..2952762 (+) 1572 WP_026579149.1 SH3 domain-containing protein -
  DI291_RS14860 (DI291_15115) dtd 2952790..2953233 (-) 444 WP_035338452.1 D-aminoacyl-tRNA deacylase -
  DI291_RS14865 (DI291_15120) - 2953247..2955448 (-) 2202 WP_023855390.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DI291_RS14870 (DI291_15125) - 2955617..2956129 (-) 513 WP_023855391.1 adenine phosphoribosyltransferase -
  DI291_RS14875 (DI291_15130) recJ 2956147..2958495 (-) 2349 WP_128822699.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DI291_RS14880 (DI291_15135) - 2958567..2958860 (-) 294 WP_023855393.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  DI291_RS14885 (DI291_15140) secDF 2959012..2961237 (-) 2226 WP_205802139.1 protein translocase subunit SecDF -
  DI291_RS14890 (DI291_15145) - 2961274..2961570 (-) 297 WP_023855396.1 post-transcriptional regulator -
  DI291_RS14895 (DI291_15150) spoVB 2961688..2963241 (+) 1554 WP_023855397.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87692.47 Da        Isoelectric Point: 5.0574

>NTDB_id=531857 DI291_RS14875 WP_128822699.1 2956147..2958495(-) (recJ) [Bacillus paralicheniformis strain SUBG0010]
MLASKMRWDVQTPDKEKVEQLAGRLGITHLAASLLVMRGYDTADKASSFLNGKDAVFHDPYLLKDMEKAVQRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRRTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTKDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDRPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDVDLCCRLEDITVDSIAEMNMLAPYGTGN
PKPFVLVSDVKIDDSRKIGANKNHLKLVLADGKNKLDCIGFYKGAIEDGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLVLESRYAVFIDIPPSLDI
FDQVIKGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAVAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=531857 DI291_RS14875 WP_128822699.1 2956147..2958495(-) (recJ) [Bacillus paralicheniformis strain SUBG0010]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGATTAGGCAT
TACTCACCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTAAATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACAGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAACGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTTGACACAGGCATTGCCGCCGTTCATGAAGCTGAAGTCGCTAAAGAGCTT
GGCGTCGATTTGATCATTACGGATCACCATGAGCCGGGACCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTTCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAGAACGAAGCGCCCCGGATTAAAGGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATTGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAAAAGACGAAACAGAAGCGGAAGAGCTGGCCGAAGATATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGGCTTGACCGGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAATCCCGGTGTCGTCGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTATTACAGGCCCGCCA
TCGTTCTCGGTATCGATGAAGAAAAAGGCATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAT
CTCTCGGAGTGCCGGGATATTCTCCCGCACTTCGGCGGGCACCCGATGGCAGCCGGAATGACACTCAACCTGGAAGATGT
TTCGGCACTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCCGTTCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATCACGGTTGACAGCATTGCCGAAATGAACATGCTGGCGCCGTACGGCACGGGAAAT
CCGAAGCCCTTCGTCCTTGTCAGCGACGTTAAAATTGATGATTCCAGGAAAATCGGCGCCAACAAGAATCACTTGAAGCT
TGTGCTGGCAGACGGCAAGAACAAGCTTGATTGCATCGGATTTTATAAAGGCGCTATCGAAGACGGGATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCAATTAACGAGTGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGATCCTGCGAA
ACGGGCGTGCATCTGCTTCCGTGAGGAAACCAAAGCGAAGCTTGCGGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGTCCTGAAGATGCAGAGCGTCTCGTCCTTGAGAGCCGCTATGCGGTATTTATAGATATTCCGCCGTCGCTCGACATC
TTTGACCAAGTGATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAAC
ATTTCCAACTAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GGGAGCTTGCCAGGCATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTGACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGTCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

68.63

99.872

0.685