Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JNE32_RS08580 Genome accession   NZ_CP068982
Coordinates   1643211..1643990 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain pb2441     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638211..1648990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS08560 (JNE32_08515) trmFO 1638904..1640211 (+) 1308 WP_029317796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JNE32_RS08565 (JNE32_08520) xerC 1640279..1641193 (+) 915 WP_250354610.1 tyrosine recombinase XerC -
  JNE32_RS08570 (JNE32_08525) clpQ 1641206..1641751 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  JNE32_RS08575 (JNE32_08530) hslU 1641759..1643171 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  JNE32_RS08580 (JNE32_08535) codY 1643211..1643990 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JNE32_RS08585 (JNE32_08540) flgB 1644370..1644759 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  JNE32_RS08590 (JNE32_08545) flgC 1644759..1645211 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  JNE32_RS08595 (JNE32_08550) fliE 1645222..1645542 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  JNE32_RS08600 (JNE32_08555) fliF 1645588..1647198 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  JNE32_RS08605 (JNE32_08560) fliG 1647211..1648227 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  JNE32_RS08610 (JNE32_08565) fliH 1648220..1648972 (+) 753 WP_038428148.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=531727 JNE32_RS08580 WP_003220850.1 1643211..1643990(+) (codY) [Bacillus subtilis strain pb2441]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=531727 JNE32_RS08580 WP_003220850.1 1643211..1643990(+) (codY) [Bacillus subtilis strain pb2441]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467