Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K5X85_RS34670 Genome accession   NZ_CP083267
Coordinates   7937489..7938514 (+) Length   341 a.a.
NCBI ID   WP_223781183.1    Uniprot ID   -
Organism   Streptomyces sp. A144     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7932489..7943514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5X85_RS34655 (K5X85_34865) - 7934110..7934973 (-) 864 WP_019330901.1 carbohydrate ABC transporter permease -
  K5X85_RS34660 (K5X85_34870) - 7934978..7935904 (-) 927 WP_019330902.1 carbohydrate ABC transporter permease -
  K5X85_RS34665 (K5X85_34875) - 7935901..7937259 (-) 1359 WP_192339500.1 ABC transporter substrate-binding protein -
  K5X85_RS34670 (K5X85_34880) cytR 7937489..7938514 (+) 1026 WP_223781183.1 LacI family DNA-binding transcriptional regulator Regulator
  K5X85_RS34675 (K5X85_34885) - 7938622..7939410 (-) 789 WP_223781184.1 SDR family NAD(P)-dependent oxidoreductase -
  K5X85_RS34680 (K5X85_34890) - 7939407..7940084 (-) 678 WP_037821439.1 GntR family transcriptional regulator -
  K5X85_RS34685 (K5X85_34895) - 7940344..7941483 (+) 1140 WP_223781185.1 mandelate racemase/muconate lactonizing enzyme family protein -
  K5X85_RS34690 (K5X85_34900) - 7941747..7942253 (-) 507 WP_031019779.1 GNAT family N-acetyltransferase -
  K5X85_RS34695 (K5X85_34905) - 7942360..7943013 (+) 654 WP_210903124.1 maleylpyruvate isomerase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37100.06 Da        Isoelectric Point: 5.6249

>NTDB_id=531529 K5X85_RS34670 WP_223781183.1 7937489..7938514(+) (cytR) [Streptomyces sp. A144]
MAGATLRDVARRAGVSIRTVSNVVNESVPVSDELRTRVEAALKELEYRPNLVARNLRRGRTGMLAFVVPELDVPYFAELA
REVITAAREHGYVVMLDQTDGDAERERELLGRESRATMFDGLLLSPLSISEDELRDRTNRVPVVLLGEHIFNGDFHHVAI
DNVAAAREATEHLVSLGRRRIAAIGDQPYSTGETAQLRTIGYRQALERAGLSVDESLIVSTPHFHRRLGAEAMRHLLALP
EPPDAVFCYNDLLAIGAMHALADAGVRVPEDVAVIGVDGIQEGEYSSPTLTTIAPDKTQIARTAVSTLVASIEGTVPPPA
DAKAPYQLLVRGSTRGAHEAR

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=531529 K5X85_RS34670 WP_223781183.1 7937489..7938514(+) (cytR) [Streptomyces sp. A144]
ATGGCCGGTGCCACCCTCCGCGACGTCGCCCGACGCGCCGGAGTCTCCATTCGCACGGTTTCCAACGTGGTCAACGAGTC
GGTCCCTGTCTCCGACGAGCTGCGGACCAGGGTGGAAGCGGCGCTGAAGGAACTCGAATACCGGCCCAACCTGGTGGCTC
GTAACCTGCGTCGGGGACGCACCGGCATGCTGGCCTTCGTCGTGCCGGAGCTCGACGTGCCGTACTTCGCCGAACTGGCA
CGCGAGGTCATCACCGCCGCCCGCGAGCACGGATACGTCGTCATGCTCGACCAGACCGACGGAGACGCCGAGCGTGAGCG
CGAACTGCTCGGCCGCGAGTCGCGCGCCACCATGTTCGACGGACTGCTGCTGAGCCCGCTGAGCATCTCCGAGGACGAAT
TGCGCGACCGCACCAACCGGGTGCCGGTCGTCCTGCTCGGCGAGCACATCTTCAACGGCGACTTTCACCACGTCGCCATC
GACAACGTCGCAGCCGCCCGTGAGGCCACCGAACACCTCGTCTCCCTGGGCCGCCGGCGCATCGCCGCCATCGGTGACCA
GCCCTACAGCACCGGCGAGACGGCGCAGTTGCGTACCATCGGCTACCGCCAGGCACTGGAGCGTGCCGGGTTGTCCGTGG
ACGAGAGCCTGATCGTGTCCACCCCGCACTTCCACCGCCGGCTCGGCGCCGAGGCCATGCGGCACCTGCTCGCCTTGCCC
GAGCCGCCCGACGCGGTCTTCTGTTACAACGACCTTCTCGCCATCGGTGCCATGCACGCCCTGGCCGATGCCGGCGTGCG
GGTGCCCGAGGACGTCGCGGTCATCGGTGTCGACGGCATCCAGGAGGGCGAGTACAGCTCACCGACCCTCACCACCATCG
CGCCCGACAAGACGCAGATCGCCCGCACGGCGGTCAGCACACTCGTCGCCAGCATCGAGGGCACCGTACCGCCGCCCGCG
GACGCCAAGGCCCCGTACCAGCTACTGGTCAGGGGCAGCACCCGCGGGGCACACGAGGCGCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

38.922

97.947

0.381