Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6T58_RS14885 Genome accession   NZ_CP083263
Coordinates   3062496..3063488 (-) Length   330 a.a.
NCBI ID   WP_223675424.1    Uniprot ID   -
Organism   Escherichia coli strain JNU     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057496..3068488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T58_RS14875 (K6T58_14805) yieP 3060388..3061080 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  K6T58_RS14880 (K6T58_14810) mdtD 3061103..3062530 (+) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  K6T58_RS14885 (K6T58_14815) cytR 3062496..3063488 (-) 993 WP_223675424.1 ribose operon transcriptional repressor RbsR Regulator
  K6T58_RS14890 (K6T58_14820) rbsK 3063492..3064421 (-) 930 WP_001300603.1 ribokinase -
  K6T58_RS14895 (K6T58_14825) rbsB 3064547..3065437 (-) 891 WP_089586145.1 ribose ABC transporter substrate-binding protein RbsB -
  K6T58_RS14900 (K6T58_14830) rbsC 3065462..3066427 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  K6T58_RS14905 (K6T58_14835) rbsA 3066432..3067937 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  K6T58_RS14910 (K6T58_14840) rbsD 3067945..3068364 (-) 420 WP_001297694.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36609.93 Da        Isoelectric Point: 5.2098

>NTDB_id=531409 K6T58_RS14885 WP_223675424.1 3062496..3063488(-) (cytR) [Escherichia coli strain JNU]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCIETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=531409 K6T58_RS14885 WP_223675424.1 3062496..3063488(-) (cytR) [Escherichia coli strain JNU]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGACGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCATCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.446

100

0.367