Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K3A98_RS08325 Genome accession   NZ_CP083259
Coordinates   1663545..1664318 (-) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25274     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658545..1669318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A98_RS08290 (K3A98_001647) - 1658799..1659569 (-) 771 WP_000473705.1 isoprenyl transferase -
  K3A98_RS08295 (K3A98_001648) frr 1659941..1660495 (-) 555 WP_001280003.1 ribosome recycling factor -
  K3A98_RS08300 (K3A98_001649) pyrH 1660514..1661236 (-) 723 WP_000057330.1 UMP kinase -
  K3A98_RS08305 (K3A98_001650) tsf 1661373..1662254 (-) 882 WP_000201387.1 translation elongation factor Ts -
  K3A98_RS08310 (K3A98_001651) - 1662289..1662402 (-) 114 WP_001789890.1 hypothetical protein -
  K3A98_RS08315 (K3A98_001652) rpsB 1662436..1663203 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  K3A98_RS08320 (K3A98_001653) - 1663402..1663494 (-) 93 WP_031785459.1 hypothetical protein -
  K3A98_RS08325 (K3A98_001654) codY 1663545..1664318 (-) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K3A98_RS08330 (K3A98_001655) hslU 1664343..1665746 (-) 1404 WP_223671435.1 ATP-dependent protease ATPase subunit HslU -
  K3A98_RS08335 (K3A98_001656) hslV 1665812..1666357 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  K3A98_RS08340 (K3A98_001657) xerC 1666354..1667250 (-) 897 WP_001015604.1 tyrosine recombinase XerC -
  K3A98_RS08345 (K3A98_001658) trmFO 1667668..1668975 (-) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=531326 K3A98_RS08325 WP_000055334.1 1663545..1664318(-) (codY) [Staphylococcus aureus strain HL25274]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=531326 K3A98_RS08325 WP_000055334.1 1663545..1664318(-) (codY) [Staphylococcus aureus strain HL25274]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428