Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K3A98_RS06305 Genome accession   NZ_CP083259
Coordinates   1230409..1231683 (-) Length   424 a.a.
NCBI ID   WP_000102743.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25274     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1225409..1236683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A98_RS06280 (K3A98_001247) hisS 1225970..1227232 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  K3A98_RS06285 (K3A98_001248) aspS 1227248..1229014 (+) 1767 WP_000044803.1 aspartate--tRNA ligase -
  K3A98_RS06295 (K3A98_001250) - 1229347..1229475 (+) 129 WP_001827648.1 hypothetical protein -
  K3A98_RS06300 (K3A98_001251) - 1229475..1230248 (+) 774 WP_000682645.1 ThiF family adenylyltransferase -
  K3A98_RS06305 (K3A98_001252) rarA 1230409..1231683 (-) 1275 WP_000102743.1 replication-associated recombination protein A Machinery gene
  K3A98_RS06310 (K3A98_001253) cymR 1231768..1232190 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  K3A98_RS06315 (K3A98_001254) - 1232290..1232472 (+) 183 WP_000752909.1 CsbD family protein -
  K3A98_RS06320 (K3A98_001255) - 1232512..1232658 (+) 147 WP_000009238.1 SAS049 family protein -
  K3A98_RS06325 (K3A98_001256) - 1232895..1233908 (-) 1014 WP_000985876.1 LLM class flavin-dependent oxidoreductase -
  K3A98_RS06330 (K3A98_001257) - 1234220..1235362 (+) 1143 WP_000409162.1 cysteine desulfurase family protein -
  K3A98_RS06335 (K3A98_001258) mnmA 1235363..1236481 (+) 1119 WP_000066099.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47292.90 Da        Isoelectric Point: 8.6816

>NTDB_id=531302 K3A98_RS06305 WP_000102743.1 1230409..1231683(-) (rarA) [Staphylococcus aureus strain HL25274]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLRDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=531302 K3A98_RS06305 WP_000102743.1 1230409..1231683(-) (rarA) [Staphylococcus aureus strain HL25274]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATAGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAATTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACCTTGCGAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCCATCCGTGGTAGTGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGACCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686