Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   K8Z53_RS21025 Genome accession   NZ_CP083238
Coordinates   3969019..3969468 (-) Length   149 a.a.
NCBI ID   WP_142782571.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3964019..3974468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS20995 (K8Z53_20745) - 3964754..3965776 (-) 1023 WP_009328558.1 SepM family pheromone-processing serine protease -
  K8Z53_RS21000 (K8Z53_20750) ylbJ 3966100..3967320 (+) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  K8Z53_RS21005 (K8Z53_20755) coaD 3967329..3967823 (-) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  K8Z53_RS21010 (K8Z53_20760) rsmD 3967816..3968382 (-) 567 WP_142782570.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K8Z53_RS21015 - 3968431..3968565 (-) 135 WP_254926361.1 hypothetical protein -
  K8Z53_RS21020 (K8Z53_20765) - 3968675..3968947 (-) 273 WP_009328559.1 YlbG family protein -
  K8Z53_RS21025 (K8Z53_20770) ylbF 3969019..3969468 (-) 450 WP_142782571.1 YlbF family regulator Regulator
  K8Z53_RS21030 (K8Z53_20775) - 3969746..3969985 (-) 240 WP_003181501.1 YlbE-like family protein -
  K8Z53_RS21035 (K8Z53_20780) - 3970000..3970395 (-) 396 WP_003181499.1 YlbD family protein -
  K8Z53_RS21040 (K8Z53_20785) - 3970549..3971592 (-) 1044 WP_003181497.1 CAP domain-containing protein -
  K8Z53_RS21045 (K8Z53_20790) - 3971733..3972179 (-) 447 WP_003181494.1 CBS domain-containing protein -
  K8Z53_RS21050 (K8Z53_20795) - 3972347..3972706 (+) 360 WP_003181492.1 YugN family protein -
  K8Z53_RS21055 (K8Z53_20800) ctaG 3972763..3973662 (-) 900 WP_011197954.1 cytochrome c oxidase assembly factor CtaG -
  K8Z53_RS21060 (K8Z53_20805) ctaF 3973696..3974025 (-) 330 WP_142782572.1 cytochrome c oxidase subunit IVB -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16917.14 Da        Isoelectric Point: 6.3347

>NTDB_id=531264 K8Z53_RS21025 WP_142782571.1 3969019..3969468(-) (ylbF) [Bacillus licheniformis strain 2709]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEITKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=531264 K8Z53_RS21025 WP_142782571.1 3969019..3969468(-) (ylbF) [Bacillus licheniformis strain 2709]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTACAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATAACCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATCTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

83.893

100

0.839